Non-Coding RNA Search

Ss1.1-Mixn-0033k01.5

Sequence:


               
               CACGGGCGGCGGGACGCTGGGACGGCGGCGGCCGGATTGCGCGAGGCATTGAAAGACGGA
GAGGTGAGGACAGAGACGTGGAGAAACAGGGAGAGAGAAGTGGAGAGAGACAGAGAGACA
GAGACGCGGAAAGGCACAGAGACTCGGGGAAAGACACAGAGAGACGTGGAGAGAGACAAA
GCAAGACACTGAACAAGGACGTAAGACAGGACAAGCTCAGTTGCCCCTGGAGCCCTGGCC
CCGCCTTCATGCCTGGCAGTTGCCCCACCTGGCCCATCCTCGCAGGTAAGCCTCAGCCTG
TGCTGCAGGCAGTCTGACTCAGTCCCCCAAGTGACTCTTGAGGAGCATCTGCAGGCAAGA
GGATGGCCCAAGTCTTGCACGTGCCAGCCCCCTTCCCAGGGACCCCCGGCCCAGCCTCCC
CGCCTGCCTTCCCCACCAAGGAGCCCGACCTGCCCTACTCCGTGGAGACACCCTACGGCT
ACCGCCTTGACCTGGACTTTCTCAAGTACGTAGATGACATCGAGAAGGGCCACACGCTAC
GGCGGGTGGCCGTGCAGCGCCGGCCCCGCCTCGGCTCCCTGCCCCGCGGCCCTGGCTCCT
GGTGGACGTCCACTGAGTCTCTGTGCTCCAATGCCAGCGGGGACAGCCGCCACTCAGCCT
ACTCCTACTGCGGCCGCGGCTTCTACCCACAGTACGGCGCCCTGGAGGCCCGTGGTGGCT
TCAACCCGCGCGTGGAGCGCACGCTGCTGGATGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACGGGCGGCGGGACGCTGGGACGGCGGCGGCCGGATTGCGCGAGGCATTGAAAGACGGA
GAGGTGAGGACAGAGACGTGGAGAAACAGGGAGAGAGAAGTGGAGAGAGACAGAGAGACA
GAGACGCGGAAAGGCACAGAGACTCGGGGAAAGACACAGAGAGACGTGGAGAGAGACAAA
GCAAGACACTGAACAAGGACGTAAGACAGGACAAGCTCAGTTGCCCCTGGAGCCCTGGCC
CCGCCTTCATGCCTGGCAGTTGCCCCACCTGGCCCATCCTCGCAGGTAAGCCTCAGCCTG
TGCTGCAGGCAGTCTGACTCAGTCCCCCAAGTGACTCTTGAGGAGCATCTGCAGGCAAGA
GGATGGCCCAAGTCTTGCACGTGCCAGCCCCCTTCCCAGGGACCCCCGGCCCAGCCTCCC
CGCCTGCCTTCCCCACCAAGGAGCCCGACCTGCCCTACTCCGTGGAGACACCCTACGGCT
ACCGCCTTGACCTGGACTTTCTCAAGTACGTAGATGACATCGAGAAGGGCCACACGCTAC
GGCGGGTGGCCGTGCAGCGCCGGCCCCGCCTCGGCTCCCTGCCCCGCGGCCCTGGCTCCT
GGTGGACGTCCACTGAGTCTCTGTGCTCCAATGCCAGCGGGGACAGCCGCCACTCAGCCT
ACTCCTACTGCGGCCGCGGCTTCTACCCACAGTACGGCGCCCTGGAGGCCCGTGGTGGCT
TCAACCCGCGCGTGGAGCGCACGCTGCTGGATGCCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q53U93_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53U93_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               185-282, - strand, RNAz p=0.966871

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               185-282, - strand, RNAz p=0.966871

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               48-288, gnl|bosTau2|chr7 (11085198-11084960)
               

               
               48-288, gnl|canFam2|chr20 (53073464-53072916)
               

               
               48-288, gnl|hg17|chr19 (11166942-11167531)
               

               
               48-288, gnl|Hg17|chr19 (11167517-11167229)
               

               
               48-288, gnl|loxAfr1|scaffold_25408 (59144-59646)
               

               
               48-288, gnl|mm7|chr9 (21678360-21678782)
               

               
               48-288, gnl|monDom2|scaffold_106 (3169435-3170080)
               

               
               48-288, gnl|panTro1|chr20 (11564037-11564606)
               

               
               48-288, gnl|rheMac2|chr19 (11019419-11019984)
               

               
               48-288, gnl|rn3|chr8 (20893241-20893657)
               


               
               397-617, gnl|bosTau2|chr7 (11083391-11083171)
               

               
               397-617, gnl|Hg17|chr19 (11165721-11165501)
               

               
               397-617, gnl|Mm7|chr9 (21677264-21677044)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               48-288, gnl|bosTau2|chr7 (11085198-11084960)
               

               
               48-288, gnl|canFam2|chr20 (53073464-53072916)
               

               
               48-288, gnl|hg17|chr19 (11166942-11167531)
               

               
               48-288, gnl|Hg17|chr19 (11167517-11167229)
               

               
               48-288, gnl|loxAfr1|scaffold_25408 (59144-59646)
               

               
               48-288, gnl|mm7|chr9 (21678360-21678782)
               

               
               48-288, gnl|monDom2|scaffold_106 (3169435-3170080)
               

               
               48-288, gnl|panTro1|chr20 (11564037-11564606)
               

               
               48-288, gnl|rheMac2|chr19 (11019419-11019984)
               

               
               48-288, gnl|rn3|chr8 (20893241-20893657)
               


               
               397-617, gnl|bosTau2|chr7 (11083391-11083171)
               

               
               397-617, gnl|Hg17|chr19 (11165721-11165501)
               

               
               397-617, gnl|Mm7|chr9 (21677264-21677044)

	48-288, gnl\|bosTau2\|chr7 (11085198-11084960)
	48-288, gnl\|canFam2\|chr20 (53073464-53072916)
	48-288, gnl\|hg17\|chr19 (11166942-11167531)
	48-288, gnl\|Hg17\|chr19 (11167517-11167229)
	48-288, gnl\|loxAfr1\|scaffold_25408 (59144-59646)
	48-288, gnl\|mm7\|chr9 (21678360-21678782)
	48-288, gnl\|monDom2\|scaffold_106 (3169435-3170080)
	48-288, gnl\|panTro1\|chr20 (11564037-11564606)
	48-288, gnl\|rheMac2\|chr19 (11019419-11019984)
	48-288, gnl\|rn3\|chr8 (20893241-20893657)

	397-617, gnl\|bosTau2\|chr7 (11083391-11083171)
	397-617, gnl\|Hg17\|chr19 (11165721-11165501)
	397-617, gnl\|Mm7\|chr9 (21677264-21677044)