Non-Coding RNA Search

Ss1.1-Mixn-0034b23.5

Sequence:


               
               GTCATCCACCAGCAGCGACAGCCTGGGCGGGGGATACTGTGGGGCTAGGCCCGAGCCTGG
CCTCCCGCATCTCCATCATCAGGTCCTGCAGCCCCATCTGCCTCGAAAGGTGGACACAGC
AGCCCAGACCAACAACCGCCTGGCTCGGCCCACGAGGCTGTCCCTGGGGGATCCCAAGGC
CAGCACCTTACCTCGGGCCCGAGAGCAGCCGCCGCAGCCGGCCCTGCTGCACCCTCCGGA
ACCCAAAAGTCCAGGGGAATATGTGAATATTGAATTTGGGGGCGATCAGCCGGGCTACTT
ATCAGGCCCGGTGGCGTCCCACAGCGCGCCTTCCGTGAGATGTTCATCGCAGCTCCAGCC
AGCTCCCAGAGAAGAGGAGACTGGCGCCGAAGAGTACATGAACATGGACCTGGGGCCAGG
CCGGAGGGCGATCTGGCAGGAGAGCACTGGGGTCCAGCCCGGGCAGGGTGGGCCCCGCCC
CCCCGGGAGCTGCTAGCGTGTGCAGGCCGACCCGGGCGGTGCCCAGCAGCCGGGGTGACT
ACATGACCATGCAGATGGGTTGTCCCCGTCAGAGCTACGTGGACATCTCGCCAGTGGCCC
CCATCAGCTATGCCGATATGCGGACCGGCATCGTCGTGGAGGAGGCCAGCCTTCCCGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCATCCACCAGCAGCGACAGCCTGGGCGGGGGATACTGTGGGGCTAGGCCCGAGCCTGG
CCTCCCGCATCTCCATCATCAGGTCCTGCAGCCCCATCTGCCTCGAAAGGTGGACACAGC
AGCCCAGACCAACAACCGCCTGGCTCGGCCCACGAGGCTGTCCCTGGGGGATCCCAAGGC
CAGCACCTTACCTCGGGCCCGAGAGCAGCCGCCGCAGCCGGCCCTGCTGCACCCTCCGGA
ACCCAAAAGTCCAGGGGAATATGTGAATATTGAATTTGGGGGCGATCAGCCGGGCTACTT
ATCAGGCCCGGTGGCGTCCCACAGCGCGCCTTCCGTGAGATGTTCATCGCAGCTCCAGCC
AGCTCCCAGAGAAGAGGAGACTGGCGCCGAAGAGTACATGAACATGGACCTGGGGCCAGG
CCGGAGGGCGATCTGGCAGGAGAGCACTGGGGTCCAGCCCGGGCAGGGTGGGCCCCGCCC
CCCCGGGAGCTGCTAGCGTGTGCAGGCCGACCCGGGCGGTGCCCAGCAGCCGGGGTGACT
ACATGACCATGCAGATGGGTTGTCCCCGTCAGAGCTACGTGGACATCTCGCCAGTGGCCC
CCATCAGCTATGCCGATATGCGGACCGGCATCGTCGTGGAGGAGGCCAGCCTTCCCGGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-278, - strand, RNAz p=0.99145

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-278, - strand, RNAz p=0.99145

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               11-88, + strand, RNAmicro p=0.989873
               

               
               189-252, - strand, RNAmicro p=0.958156

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               11-88, + strand, RNAmicro p=0.989873
               

               
               189-252, - strand, RNAmicro p=0.958156

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-660, gnl|bosTau2|chr11 (51775682-51775025)
               

               
               2-660, gnl|Hg17|chr2 (227486535-227485875)
               

               
               2-660, gnl|Mm7|chr1 (82502777-82502120)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-660, gnl|bosTau2|chr11 (51775682-51775025)
               

               
               2-660, gnl|Hg17|chr2 (227486535-227485875)
               

               
               2-660, gnl|Mm7|chr1 (82502777-82502120)

	11-88, + strand, RNAmicro p=0.989873
	189-252, - strand, RNAmicro p=0.958156

	2-660, gnl\|bosTau2\|chr11 (51775682-51775025)
	2-660, gnl\|Hg17\|chr2 (227486535-227485875)
	2-660, gnl\|Mm7\|chr1 (82502777-82502120)