Non-Coding RNA Search

Ss1.1-Mixn-0034h22.5

Sequence:


               
               GGGGGGCAGAGACGGCAGGACCCTCACCTCTGTCTCCAGGAGGCCGCTGTAGGCCGGGTT
GGCTGTGCTTCTTCTCTTCCGCTCTTGGCGCTTGCTCTGGATTTCTGAAAAGGCACAGAT
GCCGCGGTTACTTGAAGCTTCCTGCTCCAGGGAACCGTGGATGCTTCCTTGGCAAACCCT
GGGCACCACCAGCCCCTCCGGTCCGGCAGGCTCTCTGCCCAGCATCCTCGCCCCAGGAGG
CTCTGGGCGGGTTGGAGCCCCAGAATCACTCGCTCCGAGGAGGGACAGACCTGCTGGCCT
CGGGCTGAAGTATGGGATGCAGGCGCCTGCTCTCAGCACAGCCCGTGTGCCCATCACCCC
GCCTGGGGATGTCTCTTGGGACTGCTGGGACAGTAGGTGCCCGCGGGTCAGCTGCTGGCC
TGGCTGAGCTGCAGAGCTTCAGGGCTCCTGCAAAGGGCAGGTGCAAGCGAGGTCAGAAGC
ATGGCAAGCACTCTGGGTTGGGAGCCAGGAGACCTGGATTCCAGCCTGGGCCTGACCCTG
GCTGGCTGTGTGACCTTGGGCAAGTGAACCAACTTCTCCGGCCTCAGCTTCCCCACGAGT
GCAACAAGAAGGTTGGTCTCCACGCTTTGCAGGCCCTTAGGTTCTATGACGATGCACAGA
GCTGATCTTCCAAGTGCTCCGTCGTAACCAGGCCCAGCGCTACCATGAAGGCAATTTTCT
CGGGGTTCTCCTGGCTTGGGGGCCGGTCTTCCGTCTTCTTTTTGGTGGCCTGAGCTCCCT
GAGATGGCTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGGGCAGAGACGGCAGGACCCTCACCTCTGTCTCCAGGAGGCCGCTGTAGGCCGGGTT
GGCTGTGCTTCTTCTCTTCCGCTCTTGGCGCTTGCTCTGGATTTCTGAAAAGGCACAGAT
GCCGCGGTTACTTGAAGCTTCCTGCTCCAGGGAACCGTGGATGCTTCCTTGGCAAACCCT
GGGCACCACCAGCCCCTCCGGTCCGGCAGGCTCTCTGCCCAGCATCCTCGCCCCAGGAGG
CTCTGGGCGGGTTGGAGCCCCAGAATCACTCGCTCCGAGGAGGGACAGACCTGCTGGCCT
CGGGCTGAAGTATGGGATGCAGGCGCCTGCTCTCAGCACAGCCCGTGTGCCCATCACCCC
GCCTGGGGATGTCTCTTGGGACTGCTGGGACAGTAGGTGCCCGCGGGTCAGCTGCTGGCC
TGGCTGAGCTGCAGAGCTTCAGGGCTCCTGCAAAGGGCAGGTGCAAGCGAGGTCAGAAGC
ATGGCAAGCACTCTGGGTTGGGAGCCAGGAGACCTGGATTCCAGCCTGGGCCTGACCCTG
GCTGGCTGTGTGACCTTGGGCAAGTGAACCAACTTCTCCGGCCTCAGCTTCCCCACGAGT
GCAACAAGAAGGTTGGTCTCCACGCTTTGCAGGCCCTTAGGTTCTATGACGATGCACAGA
GCTGATCTTCCAAGTGCTCCGTCGTAACCAGGCCCAGCGCTACCATGAAGGCAATTTTCT
CGGGGTTCTCCTGGCTTGGGGGCCGGTCTTCCGTCTTCTTTTTGGTGGCCTGAGCTCCCT
GAGATGGCTCCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               466-583, - strand, RNAz p=0.825019

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               466-583, - strand, RNAz p=0.825019

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               11-310, gnl|bosTau2|chr5 (72776171-72775878)
               

               
               11-310, gnl|Hg17|chr22 (43609857-43610162)
               


               
               466-628, gnl|bosTau2|chr5 (72777620-72777782)
               

               
               466-628, gnl|dasNov1|scaffold_57427 (7658-8410)
               

               
               466-628, gnl|hg17|chr22 (43610891-43611717)
               

               
               466-628, gnl|Hg17|chr22 (43611534-43611690)
               

               
               466-628, gnl|panTro1|chr23 (43921707-43922532)
               

               
               466-628, gnl|rheMac2|chr10 (88885968-88886783)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-310, gnl|bosTau2|chr5 (72776171-72775878)
               

               
               11-310, gnl|Hg17|chr22 (43609857-43610162)
               


               
               466-628, gnl|bosTau2|chr5 (72777620-72777782)
               

               
               466-628, gnl|dasNov1|scaffold_57427 (7658-8410)
               

               
               466-628, gnl|hg17|chr22 (43610891-43611717)
               

               
               466-628, gnl|Hg17|chr22 (43611534-43611690)
               

               
               466-628, gnl|panTro1|chr23 (43921707-43922532)
               

               
               466-628, gnl|rheMac2|chr10 (88885968-88886783)

	11-310, gnl\|bosTau2\|chr5 (72776171-72775878)
	11-310, gnl\|Hg17\|chr22 (43609857-43610162)

	466-628, gnl\|bosTau2\|chr5 (72777620-72777782)
	466-628, gnl\|dasNov1\|scaffold_57427 (7658-8410)
	466-628, gnl\|hg17\|chr22 (43610891-43611717)
	466-628, gnl\|Hg17\|chr22 (43611534-43611690)
	466-628, gnl\|panTro1\|chr23 (43921707-43922532)
	466-628, gnl\|rheMac2\|chr10 (88885968-88886783)