Non-Coding RNA Search

Ss1.1-Mixn-0034m02.5

Sequence:


               
               AGAGCATACTGAATCAGCAGGACTGGCTGGTGGTGCAGTAAGCATCATGAGTAAGCATAA
AGAGGTCTGTTCCTTATCACATGTGTAAGGGGAAAAAGATTTAAACAAGTCTCTTGAGTG
GGTTTTCTCACTGATGGAGAATTACTTTCAAGCAGAAGCTTACAACCTGGACAAGGTGTT
AGATGAATTTGAACAAAACGAAGATGAAACTGTTTCTCCTATCTTATTGGATACAAAATG
GAATAAGATACTAGATCCCTCTTCTCACCGACTGTCATTTAACCCTGCATTGGCCAGTGT
GAATGAACCTACAGTTTCTGAGTCACAGCCACAACTGAAAATCTTCTCCCTGGCTCATTC
AGCTCCTCTTAACACAAAGGGAGAGGACCATTGTGCTAATGGACAGGATTGTAGTCTGAA
TCCAGAGATTAGCACAATGTGGATTGATGAAAATGCAGTTGCAGAAGACCAGTTAATTAA
GAGGAACTGTACCCAAGATGATCAATGCAGTACTGTTGAAGTGGGAGAGAAGAAATGTGG
AAACCTAGCTTGTCTGCCAGATGAGAAGAATGTTCTTGTTGTAGCCGTCATGCATAACTG
TGATAAAAGGACATTACAAAGTGATTTGCAGGACTGTAATAATTATAATAGTCAATCCCT
CATGGATGCTTTTAACAGTTCACTGGATAATGAAAACAGACAAACTGATCAATTTAGTTT
TAGTATAAATGGGTCCAGTGAGAAAGGAATGAACTCAGAGAAACAAGTAGATCCATTGAG
TAGACCAAATGCAGATGGGGATTCTGTTAAATATATGTGTACTACTTCATCTGATAATCT
GGCCAGTGTCTGTTCCCCTGCACAGTTACAGGATGATGAAAATACAGATAGAGAACCCTC
CATGTCTTTGATTACAAGTTTAACACTTGATTTAGTAATCTCATCCCAGGGAACGGATGA
AGGTCCTGCCCTAAAGCAAGCGGACTCTACACCAGATGAGGTTCTCACTGGCCAAACCAG
CTCTCCTAGGACAGATCTAGGGAGCCCCAATTCCTTTTCCCACTTGAGTGAGGGGATATT
GACGAATCAAAACCACCAGAGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGCATACTGAATCAGCAGGACTGGCTGGTGGTGCAGTAAGCATCATGAGTAAGCATAA
AGAGGTCTGTTCCTTATCACATGTGTAAGGGGAAAAAGATTTAAACAAGTCTCTTGAGTG
GGTTTTCTCACTGATGGAGAATTACTTTCAAGCAGAAGCTTACAACCTGGACAAGGTGTT
AGATGAATTTGAACAAAACGAAGATGAAACTGTTTCTCCTATCTTATTGGATACAAAATG
GAATAAGATACTAGATCCCTCTTCTCACCGACTGTCATTTAACCCTGCATTGGCCAGTGT
GAATGAACCTACAGTTTCTGAGTCACAGCCACAACTGAAAATCTTCTCCCTGGCTCATTC
AGCTCCTCTTAACACAAAGGGAGAGGACCATTGTGCTAATGGACAGGATTGTAGTCTGAA
TCCAGAGATTAGCACAATGTGGATTGATGAAAATGCAGTTGCAGAAGACCAGTTAATTAA
GAGGAACTGTACCCAAGATGATCAATGCAGTACTGTTGAAGTGGGAGAGAAGAAATGTGG
AAACCTAGCTTGTCTGCCAGATGAGAAGAATGTTCTTGTTGTAGCCGTCATGCATAACTG
TGATAAAAGGACATTACAAAGTGATTTGCAGGACTGTAATAATTATAATAGTCAATCCCT
CATGGATGCTTTTAACAGTTCACTGGATAATGAAAACAGACAAACTGATCAATTTAGTTT
TAGTATAAATGGGTCCAGTGAGAAAGGAATGAACTCAGAGAAACAAGTAGATCCATTGAG
TAGACCAAATGCAGATGGGGATTCTGTTAAATATATGTGTACTACTTCATCTGATAATCT
GGCCAGTGTCTGTTCCCCTGCACAGTTACAGGATGATGAAAATACAGATAGAGAACCCTC
CATGTCTTTGATTACAAGTTTAACACTTGATTTAGTAATCTCATCCCAGGGAACGGATGA
AGGTCCTGCCCTAAAGCAAGCGGACTCTACACCAGATGAGGTTCTCACTGGCCAAACCAG
CTCTCCTAGGACAGATCTAGGGAGCCCCAATTCCTTTTCCCACTTGAGTGAGGGGATATT
GACGAATCAAAACCACCAGAGAAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               202-477, - strand, RNAz p=0.861036
               

               
               918-1104, - strand, RNAz p=0.993884

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               202-477, - strand, RNAz p=0.861036
               

               
               918-1104, - strand, RNAz p=0.993884

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               202-1104, gnl|bosTau2|chr3 (63213646-63212746)
               

               
               202-1104, gnl|Hg17|chr1 (52415179-52416088)
               

               
               202-1104, gnl|Mm7|chr4 (108096253-108095356)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               202-1104, gnl|bosTau2|chr3 (63213646-63212746)
               

               
               202-1104, gnl|Hg17|chr1 (52415179-52416088)
               

               
               202-1104, gnl|Mm7|chr4 (108096253-108095356)

	202-477, - strand, RNAz p=0.861036
	918-1104, - strand, RNAz p=0.993884

	202-1104, gnl\|bosTau2\|chr3 (63213646-63212746)
	202-1104, gnl\|Hg17\|chr1 (52415179-52416088)
	202-1104, gnl\|Mm7\|chr4 (108096253-108095356)