Non-Coding RNA Search

Ss1.1-Mixn-0034o12.5

Sequence:


               
               CAATACTCCTCTGGGGATATTTCATCAGTTATACCTAAACTCTAATGGACAATAATTGAT
TTGAACTTTCCACTTAGCACAGAGCTGTAAACAGCTTCACTGCAGACGGCAGCAATGAGC
CGACGTTTTGTAAAGTGGAGAGAGATTCAGAAAACTTTTGTACTGGGTCAGGCTGTAGCC
TAACAGCTTTTGTATCCAGGGAAGAAACAGTTTGTCCTCCTGGTTTTAATAGCTGGGCTA
ATAGAGTTTCAAGTCTGCAGTAGGTATAGGTTACCTTTTGAAGGCATTCCATTTTAACCC
CGCACCATTATGATGGGTTTATAACCCAGCCATAAAAATGCATTCCTGATTTAAACATAC
ATCAGGACACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATACTCCTCTGGGGATATTTCATCAGTTATACCTAAACTCTAATGGACAATAATTGAT
TTGAACTTTCCACTTAGCACAGAGCTGTAAACAGCTTCACTGCAGACGGCAGCAATGAGC
CGACGTTTTGTAAAGTGGAGAGAGATTCAGAAAACTTTTGTACTGGGTCAGGCTGTAGCC
TAACAGCTTTTGTATCCAGGGAAGAAACAGTTTGTCCTCCTGGTTTTAATAGCTGGGCTA
ATAGAGTTTCAAGTCTGCAGTAGGTATAGGTTACCTTTTGAAGGCATTCCATTTTAACCC
CGCACCATTATGATGGGTTTATAACCCAGCCATAAAAATGCATTCCTGATTTAAACATAC
ATCAGGACACAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-372, + strand, RNAz p=0.947776

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-372, + strand, RNAz p=0.947776

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-372, gnl|bosTau2|chr1 (33708733-33709104)
               

               
               1-372, gnl|Hg17|chr3 (115622895-115623266)
               

               
               1-372, gnl|Mm7|chr16 (43301609-43301240)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-372, gnl|bosTau2|chr1 (33708733-33709104)
               

               
               1-372, gnl|Hg17|chr3 (115622895-115623266)
               

               
               1-372, gnl|Mm7|chr16 (43301609-43301240)

	1-372, gnl\|bosTau2\|chr1 (33708733-33709104)
	1-372, gnl\|Hg17\|chr3 (115622895-115623266)
	1-372, gnl\|Mm7\|chr16 (43301609-43301240)