Non-Coding RNA Search

Ss1.1-Mixn-0035f24.5

Sequence:


               
               CCCTCTCCCGGACCCTCCTCCAGGTGTGGTGCGTTCAGCAAGGCTCCTTTCTCAGACCTA
GCGACTTACAGGAAGCGACCCTGTCTGAGTCTGTCCAGTAGCTGAGCAAGACCCTGGGCC
TCTCCCTGGCTCGGCAAGACCTCGGGGGCCAGCCTGGCCTGGGATTTGGGCCTGTGGCAG
CTGCGTGGGCACCAGCTCTCAGGAACCAGCCAGGCAGCAGTGTCCACAAAGGACCTTCCT
CATTTCCTGCTGTGGTACCCCTGCCCCTCCCCACCCCCTTCAACCCTCACTGACCTGCAC
ATGCTGGACTTCCGGGAACTGGAGCTGCTGGGCGATGACGGTGGAGTCTGGTAGGACCAG
CTGTAATCTGAGCCCTTTAGGTCTTTGATCACCTGGACATGGGCATGGATGCTGTCACTG
CAGGAAGCCCTGTGCTGCTGAAAGCCTTACCACCCCCCCCACCGTTCCAGGGCTAGTGGG
GGCCAGAGGCCCCCCCATTGTCTTCCCAGTTGAGAACCAGGCCCCAAAAGAGATCCCTGG
GAATATGAAGCCCCCTTCCCCTCAGCAAACTCTTCACTTAGGGGGCTGGAAGCAGGGCTG
CCAGAGGGCTGGGCAAAGGCCTGGGGAGATTGTGCCCTTTCTGCTTCTCAGGGACACTGC
CCTGGCCGGGCCATGGGAGAACCTGGTGCTTCTGAGGACTCACCGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTCTCCCGGACCCTCCTCCAGGTGTGGTGCGTTCAGCAAGGCTCCTTTCTCAGACCTA
GCGACTTACAGGAAGCGACCCTGTCTGAGTCTGTCCAGTAGCTGAGCAAGACCCTGGGCC
TCTCCCTGGCTCGGCAAGACCTCGGGGGCCAGCCTGGCCTGGGATTTGGGCCTGTGGCAG
CTGCGTGGGCACCAGCTCTCAGGAACCAGCCAGGCAGCAGTGTCCACAAAGGACCTTCCT
CATTTCCTGCTGTGGTACCCCTGCCCCTCCCCACCCCCTTCAACCCTCACTGACCTGCAC
ATGCTGGACTTCCGGGAACTGGAGCTGCTGGGCGATGACGGTGGAGTCTGGTAGGACCAG
CTGTAATCTGAGCCCTTTAGGTCTTTGATCACCTGGACATGGGCATGGATGCTGTCACTG
CAGGAAGCCCTGTGCTGCTGAAAGCCTTACCACCCCCCCCACCGTTCCAGGGCTAGTGGG
GGCCAGAGGCCCCCCCATTGTCTTCCCAGTTGAGAACCAGGCCCCAAAAGAGATCCCTGG
GAATATGAAGCCCCCTTCCCCTCAGCAAACTCTTCACTTAGGGGGCTGGAAGCAGGGCTG
CCAGAGGGCTGGGCAAAGGCCTGGGGAGATTGTGCCCTTTCTGCTTCTCAGGGACACTGC
CCTGGCCGGGCCATGGGAGAACCTGGTGCTTCTGAGGACTCACCGTCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               69-172, - strand, RNAz p=0.50753

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               69-172, - strand, RNAz p=0.50753

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               113-199, + strand, RNAmicro p=0.961475
               

               
               74-162, - strand, RNAmicro p=0.923327

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               113-199, + strand, RNAmicro p=0.961475
               

               
               74-162, - strand, RNAmicro p=0.923327

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               69-228, gnl|bosTau2|chr18 (564154-563995)
               

               
               69-228, gnl|Hg17|chr16 (69267630-69267802)
               


               
               284-701, gnl|bosTau2|chr18 (563573-563160)
               

               
               284-701, gnl|Hg17|chr16 (69268274-69268611)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               69-228, gnl|bosTau2|chr18 (564154-563995)
               

               
               69-228, gnl|Hg17|chr16 (69267630-69267802)
               


               
               284-701, gnl|bosTau2|chr18 (563573-563160)
               

               
               284-701, gnl|Hg17|chr16 (69268274-69268611)

	113-199, + strand, RNAmicro p=0.961475
	74-162, - strand, RNAmicro p=0.923327

	69-228, gnl\|bosTau2\|chr18 (564154-563995)
	69-228, gnl\|Hg17\|chr16 (69267630-69267802)

	284-701, gnl\|bosTau2\|chr18 (563573-563160)
	284-701, gnl\|Hg17\|chr16 (69268274-69268611)