Non-Coding RNA Search

Ss1.1-Mixn-0035j01.5

Sequence:


               
               TTCCTACACCAGTGGGCTTTGGTGACAAGCGAGTCTCCCTTTGAAGACTCCTGCAGCCAC
CATCTTCTTCCCCAAAGCAACTCTTTTTCCAGGGCTCTGCATCCTTTCAGTTCCATCCTT
TGCCCATGCAGAGACCAGGAGTTCCTACATCTCGGCTCCAGAGGCAGCATAATGTGACAG
CCTCACGTTGCCACTGGTGGCACTTCTGCCCTCGGCTTCTACCTTGATGCCCAGACGCAG
AGTCCAGAGAATGGGCCTGTACATTGCACTGCAGAGATAAACACGCTCACACAACGCCAC
TCACTCGAGACAAGGCCCGCCTCTGTGCTTTCAGCTGCTCACACCCACCTTGAGGAAAGA
TACTGATCAGTACCAGGTCCAGGTCTAAAGCCCAGTGGAGTCGCTTGCCTGGGTAGCAGG
AAACCTTAATCCGGTCCTTGCCGCTTCACTGCATGCTGGGCGACTTGGGTGGCTGTCCCC
GCGTGTGGGGTTAACACGCGTGGACCGATGGGCTTCTGTGTCAGTAGGCGGCGCATGGTG
TGTTGACTGTTTGTTCTCTCTGTGTAGCTTTGGTGTGAAGCTTATGGACTTCCAGGCCCA
CCGGCGGGGTGGCACTCTAAATAGAAAGCACATATCCCCTGCTTTCCAGCCGCCACTCCC
GCCCACAGATGGCAGCACCTTGGCGCCAGCAGGCCCGGAGCCCCCTCCCCAGAGCTCTAG
GGCTGAAAGCAGCACAGGGGGTGGGACTGTCCCCTCCACTGCGGGCATGCTGGAGCAGGG
GCCGAGCCCGGGCGACAGCAGGTAAGGAGGCCAGCTTCTGCCGGCAGCAGGTGCTGGACA
ACCCCCGCCTTCTTGCAGGTGCTGGCCTGCGGGTATGGCCTCAGTGCCCCAGGGGCCACT
CAGCACAGAGGGAACCGGATTTGCCTTCACTCCTCCTTTTGCAAAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTACACCAGTGGGCTTTGGTGACAAGCGAGTCTCCCTTTGAAGACTCCTGCAGCCAC
CATCTTCTTCCCCAAAGCAACTCTTTTTCCAGGGCTCTGCATCCTTTCAGTTCCATCCTT
TGCCCATGCAGAGACCAGGAGTTCCTACATCTCGGCTCCAGAGGCAGCATAATGTGACAG
CCTCACGTTGCCACTGGTGGCACTTCTGCCCTCGGCTTCTACCTTGATGCCCAGACGCAG
AGTCCAGAGAATGGGCCTGTACATTGCACTGCAGAGATAAACACGCTCACACAACGCCAC
TCACTCGAGACAAGGCCCGCCTCTGTGCTTTCAGCTGCTCACACCCACCTTGAGGAAAGA
TACTGATCAGTACCAGGTCCAGGTCTAAAGCCCAGTGGAGTCGCTTGCCTGGGTAGCAGG
AAACCTTAATCCGGTCCTTGCCGCTTCACTGCATGCTGGGCGACTTGGGTGGCTGTCCCC
GCGTGTGGGGTTAACACGCGTGGACCGATGGGCTTCTGTGTCAGTAGGCGGCGCATGGTG
TGTTGACTGTTTGTTCTCTCTGTGTAGCTTTGGTGTGAAGCTTATGGACTTCCAGGCCCA
CCGGCGGGGTGGCACTCTAAATAGAAAGCACATATCCCCTGCTTTCCAGCCGCCACTCCC
GCCCACAGATGGCAGCACCTTGGCGCCAGCAGGCCCGGAGCCCCCTCCCCAGAGCTCTAG
GGCTGAAAGCAGCACAGGGGGTGGGACTGTCCCCTCCACTGCGGGCATGCTGGAGCAGGG
GCCGAGCCCGGGCGACAGCAGGTAAGGAGGCCAGCTTCTGCCGGCAGCAGGTGCTGGACA
ACCCCCGCCTTCTTGCAGGTGCTGGCCTGCGGGTATGGCCTCAGTGCCCCAGGGGCCACT
CAGCACAGAGGGAACCGGATTTGCCTTCACTCCTCCTTTTGCAAAGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61834533|ref|XP_606496.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61834533|ref|XP_606496.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               404-948, + strand, RNAz p=0.991331

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               404-948, + strand, RNAz p=0.991331

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC080195, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC080195, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               128-948, gnl|bosTau2|chr25 (22473967-22474790)
               

               
               128-948, gnl|Hg17|chr16 (24858740-24858039)
               


               
               607-801, gnl|bosTau2|chr21 (33803913-33804100)
               

               
               607-801, gnl|Hg17|chr14 (43135407-43135597)
               

               
               607-801, gnl|Mm7|chr7 (119397344-119397138)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               128-948, gnl|bosTau2|chr25 (22473967-22474790)
               

               
               128-948, gnl|Hg17|chr16 (24858740-24858039)
               


               
               607-801, gnl|bosTau2|chr21 (33803913-33804100)
               

               
               607-801, gnl|Hg17|chr14 (43135407-43135597)
               

               
               607-801, gnl|Mm7|chr7 (119397344-119397138)

	128-948, gnl\|bosTau2\|chr25 (22473967-22474790)
	128-948, gnl\|Hg17\|chr16 (24858740-24858039)

	607-801, gnl\|bosTau2\|chr21 (33803913-33804100)
	607-801, gnl\|Hg17\|chr14 (43135407-43135597)
	607-801, gnl\|Mm7\|chr7 (119397344-119397138)