Non-Coding RNA Search

Ss1.1-Mixn-0035k24.5

Sequence:


               
               GTTTTTTGAACAATGAGGGATGTTTAACAGAGGACCATATATTTCTTCTACCTGTTCTCA
TCAGTTTCCATATGGATCCCCAAAACTGAAGATACCCATTCCTTTTTTTTAAAAAAAAAT
ATCACTTTTTATTAAAATGGCTACCTTATTTTCATTACTCATAAAACAGGATGCCCCTGG
CTACTTATGGTGGAATTTTGGCTTTAAAGAGCAGTTTAAAATGAAGCCTGTGTATTGGCA
ACTTGGATGGGGAGGGAGAGAGAAAATGGAGTCACGGGAGGTAGCAAATTGGCACCTCAG
CTTTCACCCTTCCCTACACTTCTAAGCTATTTCAGACAAACACACACTACTGTACAAGAC
AGATGATTAATAAGAACTTACTGTATAGCTCAGGGAAATCTACTCAATGACACGCATTCC
TTTTTAAAATTATTTTTTATCAATTCACATTGAAATAGTATTGGCCAAAGTTCAGCCTGG
CTCTAAGTCTAGCTAATCAAACTGCTGTGCCACAAACAGCGGGATATTTCTTAATTCACA
ACTATTGTTCCTAAGTCTTCAACTACTCTAATCCTTACCTTCAAAGATTCCCCCATATGA
ATGAACTAAGCAGAATAACCCAAAACAATAAGAGAAAGACTTGAGTTTTTAGCAAATGTA
ATTCTTAACTAGAAAGCATTCACTAATGGTTCCTAACCATTTACCAGTAAGTTTGGTTTA
TAATGTGGAAAATCTGACTTCATTTGCCAAAGATCAGACAGCTCAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTTGAACAATGAGGGATGTTTAACAGAGGACCATATATTTCTTCTACCTGTTCTCA
TCAGTTTCCATATGGATCCCCAAAACTGAAGATACCCATTCCTTTTTTTTAAAAAAAAAT
ATCACTTTTTATTAAAATGGCTACCTTATTTTCATTACTCATAAAACAGGATGCCCCTGG
CTACTTATGGTGGAATTTTGGCTTTAAAGAGCAGTTTAAAATGAAGCCTGTGTATTGGCA
ACTTGGATGGGGAGGGAGAGAGAAAATGGAGTCACGGGAGGTAGCAAATTGGCACCTCAG
CTTTCACCCTTCCCTACACTTCTAAGCTATTTCAGACAAACACACACTACTGTACAAGAC
AGATGATTAATAAGAACTTACTGTATAGCTCAGGGAAATCTACTCAATGACACGCATTCC
TTTTTAAAATTATTTTTTATCAATTCACATTGAAATAGTATTGGCCAAAGTTCAGCCTGG
CTCTAAGTCTAGCTAATCAAACTGCTGTGCCACAAACAGCGGGATATTTCTTAATTCACA
ACTATTGTTCCTAAGTCTTCAACTACTCTAATCCTTACCTTCAAAGATTCCCCCATATGA
ATGAACTAAGCAGAATAACCCAAAACAATAAGAGAAAGACTTGAGTTTTTAGCAAATGTA
ATTCTTAACTAGAAAGCATTCACTAATGGTTCCTAACCATTTACCAGTAAGTTTGGTTTA
TAATGTGGAAAATCTGACTTCATTTGCCAAAGATCAGACAGCTCAAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               646-741, + strand, RNAz p=0.570592

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               646-741, + strand, RNAz p=0.570592

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               418-768, gnl|bosTau2|chr8 (48641108-48640759)
               

               
               418-768, gnl|Hg17|chr9 (101311077-101310661)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               418-768, gnl|bosTau2|chr8 (48641108-48640759)
               

               
               418-768, gnl|Hg17|chr9 (101311077-101310661)

	418-768, gnl\|bosTau2\|chr8 (48641108-48640759)
	418-768, gnl\|Hg17\|chr9 (101311077-101310661)