Non-Coding RNA Search

Ss1.1-Mixn-0035p01.5

Sequence:


               
               CATCCGGGATATTTTGTGGGACCATCAGAGGAATGCATGAAACCAGGGCCATCCTGAAAA
ACCCAGGCCAGGGGTTTTCCTGGGCCCCAGGTGGGGCTGAGCACAGAAGCTGCAAGGTGA
CCATTCTGGCTGCTAGCGTGAGTGTGCCAGCCTGGGTGAGGAGGCAGAGACAGCCTGCCA
GGGCTTCTCTCACTTGCCTGATGTCAGAGGCCATGGACCAGCCGGCTGAGAGCCCTGGAA
ACCCGAAGCCTGGAGAGGGTGGTGATGACAGCATGGAGCCGGGTACCTGCCAGGAGCTCT
TGCACCGGCTGCGGGAGCTGGAGGCAGAGAACACGGCGCTTGCCCAGGCCAACGAAAACC
AGCGGGAGACCTACGAACGCTGTCTGGACGAGGTTGCCAACCACGTGGTGCAGGCACTGC
TGAACCAAAAGGACCTGCGGGAGGAGTGCATCAAGCTGAAGAAGAGGGTGTTTGACCTGG
AACGGCAGAACCAGATGCTGAGCGCGTTGTTTCAGCAGAAACTCCAGCTCACGGCAGGCT
CCCTCCCTCAGATCCCACTTGCCCCACTCCAGCCGCCATCAGAGCCCCCAGCCTCCCCGT
CCCTGAGCTCCGCCGAGGGACCGGCCACCTCGCTGCCTCTGGGACGTTGTGCTGGACAGA
GAGAGAGCCCAGGTAATCACCCACTGTGCCAGACCGGACTGGGCATGAGAAGGGGCCAAA
CAGAAGCAAGAAAGGGCTCGCAGTGGAGCGGTTCCCGGTCTGCTTTGCCATGGGGATCAG
CTCAGCGGAACAGCTGTCTGACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCCGGGATATTTTGTGGGACCATCAGAGGAATGCATGAAACCAGGGCCATCCTGAAAA
ACCCAGGCCAGGGGTTTTCCTGGGCCCCAGGTGGGGCTGAGCACAGAAGCTGCAAGGTGA
CCATTCTGGCTGCTAGCGTGAGTGTGCCAGCCTGGGTGAGGAGGCAGAGACAGCCTGCCA
GGGCTTCTCTCACTTGCCTGATGTCAGAGGCCATGGACCAGCCGGCTGAGAGCCCTGGAA
ACCCGAAGCCTGGAGAGGGTGGTGATGACAGCATGGAGCCGGGTACCTGCCAGGAGCTCT
TGCACCGGCTGCGGGAGCTGGAGGCAGAGAACACGGCGCTTGCCCAGGCCAACGAAAACC
AGCGGGAGACCTACGAACGCTGTCTGGACGAGGTTGCCAACCACGTGGTGCAGGCACTGC
TGAACCAAAAGGACCTGCGGGAGGAGTGCATCAAGCTGAAGAAGAGGGTGTTTGACCTGG
AACGGCAGAACCAGATGCTGAGCGCGTTGTTTCAGCAGAAACTCCAGCTCACGGCAGGCT
CCCTCCCTCAGATCCCACTTGCCCCACTCCAGCCGCCATCAGAGCCCCCAGCCTCCCCGT
CCCTGAGCTCCGCCGAGGGACCGGCCACCTCGCTGCCTCTGGGACGTTGTGCTGGACAGA
GAGAGAGCCCAGGTAATCACCCACTGTGCCAGACCGGACTGGGCATGAGAAGGGGCCAAA
CAGAAGCAAGAAAGGGCTCGCAGTGGAGCGGTTCCCGGTCTGCTTTGCCATGGGGATCAG
CTCAGCGGAACAGCTGTCTGACCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|42659943|ref|XP_374976.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|42659943|ref|XP_374976.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               14-112, - strand, RNAz p=0.963132

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               14-112, - strand, RNAz p=0.963132

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-112, gnl|bosTau2|chr5 (21596156-21596268)
               

               
               1-112, gnl|canFam2|chr27 (7896384-7896265)
               

               
               1-112, gnl|hg17|chr12 (48488741-48488869)
               

               
               1-112, gnl|Hg17|chr12 (48488905-48488798)
               

               
               1-112, gnl|loxAfr1|scaffold_3076 (84209-84365)
               

               
               1-112, gnl|mm7|chr15 (99424353-99424451)
               

               
               1-112, gnl|Mm7|chr15 (99424482-99424386)
               

               
               1-112, gnl|oryCun1|scaffold_174376 (21029-20938)
               

               
               1-112, gnl|panTro1|chr10_random (20174530-20174402)
               

               
               1-112, gnl|rheMac2|chr11 (46942084-46942207)
               

               
               1-112, gnl|rn3|chr7 (138260731-138260856)
               


               
               172-347, gnl|bosTau2|chr5 (21600119-21600304)
               

               
               172-347, gnl|Hg17|chr12 (48484132-48483932)
               

               
               172-347, gnl|Mm7|chr15 (99419436-99419262)
               


               
               430-597, gnl|bosTau2|chr5 (21601910-21602083)
               

               
               430-597, gnl|Hg17|chr12 (48482019-48481850)
               

               
               430-597, gnl|Mm7|chr15 (99418071-99417911)
               


               
               665-804, gnl|bosTau2|chr5 (21605490-21605627)
               

               
               665-804, gnl|Hg17|chr12 (48478009-48477892)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-112, gnl|bosTau2|chr5 (21596156-21596268)
               

               
               1-112, gnl|canFam2|chr27 (7896384-7896265)
               

               
               1-112, gnl|hg17|chr12 (48488741-48488869)
               

               
               1-112, gnl|Hg17|chr12 (48488905-48488798)
               

               
               1-112, gnl|loxAfr1|scaffold_3076 (84209-84365)
               

               
               1-112, gnl|mm7|chr15 (99424353-99424451)
               

               
               1-112, gnl|Mm7|chr15 (99424482-99424386)
               

               
               1-112, gnl|oryCun1|scaffold_174376 (21029-20938)
               

               
               1-112, gnl|panTro1|chr10_random (20174530-20174402)
               

               
               1-112, gnl|rheMac2|chr11 (46942084-46942207)
               

               
               1-112, gnl|rn3|chr7 (138260731-138260856)
               


               
               172-347, gnl|bosTau2|chr5 (21600119-21600304)
               

               
               172-347, gnl|Hg17|chr12 (48484132-48483932)
               

               
               172-347, gnl|Mm7|chr15 (99419436-99419262)
               


               
               430-597, gnl|bosTau2|chr5 (21601910-21602083)
               

               
               430-597, gnl|Hg17|chr12 (48482019-48481850)
               

               
               430-597, gnl|Mm7|chr15 (99418071-99417911)
               


               
               665-804, gnl|bosTau2|chr5 (21605490-21605627)
               

               
               665-804, gnl|Hg17|chr12 (48478009-48477892)

	1-112, gnl\|bosTau2\|chr5 (21596156-21596268)
	1-112, gnl\|canFam2\|chr27 (7896384-7896265)
	1-112, gnl\|hg17\|chr12 (48488741-48488869)
	1-112, gnl\|Hg17\|chr12 (48488905-48488798)
	1-112, gnl\|loxAfr1\|scaffold_3076 (84209-84365)
	1-112, gnl\|mm7\|chr15 (99424353-99424451)
	1-112, gnl\|Mm7\|chr15 (99424482-99424386)
	1-112, gnl\|oryCun1\|scaffold_174376 (21029-20938)
	1-112, gnl\|panTro1\|chr10_random (20174530-20174402)
	1-112, gnl\|rheMac2\|chr11 (46942084-46942207)
	1-112, gnl\|rn3\|chr7 (138260731-138260856)

	172-347, gnl\|bosTau2\|chr5 (21600119-21600304)
	172-347, gnl\|Hg17\|chr12 (48484132-48483932)
	172-347, gnl\|Mm7\|chr15 (99419436-99419262)

	430-597, gnl\|bosTau2\|chr5 (21601910-21602083)
	430-597, gnl\|Hg17\|chr12 (48482019-48481850)
	430-597, gnl\|Mm7\|chr15 (99418071-99417911)

	665-804, gnl\|bosTau2\|chr5 (21605490-21605627)
	665-804, gnl\|Hg17\|chr12 (48478009-48477892)