Non-Coding RNA Search

Ss1.1-Mixn-0036f13.5

Sequence:


               
               CCGGGATGGGGTAGCAGTGTCTGCGTCCTGTCCCAAACAGACTGGAGAGATCGTGGCCCT
CAAGAAGGTGGCCCTACGGCGGCTGGAGGATGGCATCCCCAACCAGGCCCTGCGGGAGAT
CAAGGCCCTGCAGGAGATTGAGGACAGTCAGTATGACCTGAAACCAGCCAACTTGCTAAT
CAGCGCCTCACGCCAGCTCAAGATAGCAGACTTTGGCCTGGCCTGGGGCCTTTTCCCCAG
ATGGCTGCCGCCTCTACATGCACCAGGTGGCCACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGGATGGGGTAGCAGTGTCTGCGTCCTGTCCCAAACAGACTGGAGAGATCGTGGCCCT
CAAGAAGGTGGCCCTACGGCGGCTGGAGGATGGCATCCCCAACCAGGCCCTGCGGGAGAT
CAAGGCCCTGCAGGAGATTGAGGACAGTCAGTATGACCTGAAACCAGCCAACTTGCTAAT
CAGCGCCTCACGCCAGCTCAAGATAGCAGACTTTGGCCTGGCCTGGGGCCTTTTCCCCAG
ATGGCTGCCGCCTCTACATGCACCAGGTGGCCACCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               37-155, + strand, RNAz p=0.72331

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-155, + strand, RNAz p=0.72331

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               3-155, gnl|bosTau2|chr8 (49336174-49336326)
               

               
               3-155, gnl|canFam2|chr1 (100690639-100690491)
               

               
               3-155, gnl|danRer3|chr8 (20699640-20699763)
               

               
               3-155, gnl|echTel1|scaffold_297482 (8798-8946)
               

               
               3-155, gnl|fr1|chrUn (238502699-238502549)
               

               
               3-155, gnl|hg17|chr9 (87818386-87818533)
               

               
               3-155, gnl|Hg17|chr9 (87818541-87818390)
               

               
               3-155, gnl|loxAfr1|scaffold_141200 (5017-5166)
               

               
               3-155, gnl|mm7|chr13 (62262278-62262129)
               

               
               3-155, gnl|Mm7|chr13 (62262115-62262272)
               

               
               3-155, gnl|monDom2|scaffold_134 (220762-220620)
               

               
               3-155, gnl|panTro1|chr11 (71885722-71885575)
               

               
               3-155, gnl|rheMac2|chr15 (96452675-96452822)
               

               
               3-155, gnl|rn3|chr17 (6227254-6227403)
               

               
               3-155, gnl|tetNig1|chrUn_random (163351110-163351231)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-155, gnl|bosTau2|chr8 (49336174-49336326)
               

               
               3-155, gnl|canFam2|chr1 (100690639-100690491)
               

               
               3-155, gnl|danRer3|chr8 (20699640-20699763)
               

               
               3-155, gnl|echTel1|scaffold_297482 (8798-8946)
               

               
               3-155, gnl|fr1|chrUn (238502699-238502549)
               

               
               3-155, gnl|hg17|chr9 (87818386-87818533)
               

               
               3-155, gnl|Hg17|chr9 (87818541-87818390)
               

               
               3-155, gnl|loxAfr1|scaffold_141200 (5017-5166)
               

               
               3-155, gnl|mm7|chr13 (62262278-62262129)
               

               
               3-155, gnl|Mm7|chr13 (62262115-62262272)
               

               
               3-155, gnl|monDom2|scaffold_134 (220762-220620)
               

               
               3-155, gnl|panTro1|chr11 (71885722-71885575)
               

               
               3-155, gnl|rheMac2|chr15 (96452675-96452822)
               

               
               3-155, gnl|rn3|chr17 (6227254-6227403)
               

               
               3-155, gnl|tetNig1|chrUn_random (163351110-163351231)

	3-155, gnl\|bosTau2\|chr8 (49336174-49336326)
	3-155, gnl\|canFam2\|chr1 (100690639-100690491)
	3-155, gnl\|danRer3\|chr8 (20699640-20699763)
	3-155, gnl\|echTel1\|scaffold_297482 (8798-8946)
	3-155, gnl\|fr1\|chrUn (238502699-238502549)
	3-155, gnl\|hg17\|chr9 (87818386-87818533)
	3-155, gnl\|Hg17\|chr9 (87818541-87818390)
	3-155, gnl\|loxAfr1\|scaffold_141200 (5017-5166)
	3-155, gnl\|mm7\|chr13 (62262278-62262129)
	3-155, gnl\|Mm7\|chr13 (62262115-62262272)
	3-155, gnl\|monDom2\|scaffold_134 (220762-220620)
	3-155, gnl\|panTro1\|chr11 (71885722-71885575)
	3-155, gnl\|rheMac2\|chr15 (96452675-96452822)
	3-155, gnl\|rn3\|chr17 (6227254-6227403)
	3-155, gnl\|tetNig1\|chrUn_random (163351110-163351231)