Non-Coding RNA Search

Ss1.1-Mixn-0036m13.5

Sequence:


               
               GCGCCACCGCGGCTGCGGCCACCGAGCAAGTCCCAGACCATGGCCGGGCGGTCCCCTGGC
TCCGCGCCTCTAGTCCGGCCGTCGCCGTCGCCCTAGGCCGCGCCGCGAGATGTGGAAACA
GAGGCCCATAGAGGCTTAAAGCTTGCCTGGGGTCACACAGCCTGGACACTGCAGAGCTGA
CATTTGAATCCAGAGAAGAGCAAGCTGAAACCAGAACTGGGCAGAGGGCAGGGAAGTGAG
CAGTGGCCTGAGAGGCCCCGAGCCCCCGCAGGCCCCGCCATGAAGCTGAACGAGCGCAGC
CTGGCCTTCTACGCCACGTGCGATGCCCCGGCCGACAACGCGGGCTTCCTGTACAAGAAG
GGCGGCCGGCACGCGGCCTACCACCGCCGCTGGTTCGTGCTGCGCGGCAACATGCTCTTC
TACTTCGAGGATGCCGCCAGCCGCGAGCCCGTGGGCGTCATCATCCTGGAGGGCTGCACC
GTGGAGCTGGTGGAGGCCGCCGAGGAGTTCGCCTTCGCGGTGCGCTTTGCCGGGTCCCGG
GCCCGCACCTACGTACTGGCGGCTGAGAGCCAGGCCGCCATGGAGGGCTGGGTGAAGGCG
CTGTCGCGGGCCAGCTTCGACTACCTGCGCCTGGTGGTGCGCGAGCTG------------
GAGGCGGTGCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCCACCGCGGCTGCGGCCACCGAGCAAGTCCCAGACCATGGCCGGGCGGTCCCCTGGC
TCCGCGCCTCTAGTCCGGCCGTCGCCGTCGCCCTAGGCCGCGCCGCGAGATGTGGAAACA
GAGGCCCATAGAGGCTTAAAGCTTGCCTGGGGTCACACAGCCTGGACACTGCAGAGCTGA
CATTTGAATCCAGAGAAGAGCAAGCTGAAACCAGAACTGGGCAGAGGGCAGGGAAGTGAG
CAGTGGCCTGAGAGGCCCCGAGCCCCCGCAGGCCCCGCCATGAAGCTGAACGAGCGCAGC
CTGGCCTTCTACGCCACGTGCGATGCCCCGGCCGACAACGCGGGCTTCCTGTACAAGAAG
GGCGGCCGGCACGCGGCCTACCACCGCCGCTGGTTCGTGCTGCGCGGCAACATGCTCTTC
TACTTCGAGGATGCCGCCAGCCGCGAGCCCGTGGGCGTCATCATCCTGGAGGGCTGCACC
GTGGAGCTGGTGGAGGCCGCCGAGGAGTTCGCCTTCGCGGTGCGCTTTGCCGGGTCCCGG
GCCCGCACCTACGTACTGGCGGCTGAGAGCCAGGCCGCCATGGAGGGCTGGGTGAAGGCG
CTGTCGCGGGCCAGCTTCGACTACCTGCGCCTGGTGGTGCGCGAGCTG------------
GAGGCGGTGCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33991475|gb|AAH14091.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33991475|gb|AAH14091.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               108-226, - strand, RNAz p=0.782015

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               108-226, - strand, RNAz p=0.782015

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               108-255, gnl|bosTau2|chr17 (29460114-29460261)
               

               
               108-255, gnl|Hg17|chr12 (110266783-110266636)
               


               
               341-651, gnl|bosTau2|chr17 (29462634-29462944)
               

               
               341-651, gnl|canFam2|chr26 (12023048-12023358)
               

               
               341-651, gnl|Hg17|chr12 (110263890-110263580)
               

               
               341-651, gnl|hg17|chr8 (50053070-50053277)
               

               
               341-651, gnl|Mm7|chr5 (121086902-121087210)
               

               
               341-651, gnl|panTro1|chr7 (51636773-51636981)
               

               
               341-651, gnl|rheMac2|chr8 (51496266-51496506)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               108-255, gnl|bosTau2|chr17 (29460114-29460261)
               

               
               108-255, gnl|Hg17|chr12 (110266783-110266636)
               


               
               341-651, gnl|bosTau2|chr17 (29462634-29462944)
               

               
               341-651, gnl|canFam2|chr26 (12023048-12023358)
               

               
               341-651, gnl|Hg17|chr12 (110263890-110263580)
               

               
               341-651, gnl|hg17|chr8 (50053070-50053277)
               

               
               341-651, gnl|Mm7|chr5 (121086902-121087210)
               

               
               341-651, gnl|panTro1|chr7 (51636773-51636981)
               

               
               341-651, gnl|rheMac2|chr8 (51496266-51496506)

	108-255, gnl\|bosTau2\|chr17 (29460114-29460261)
	108-255, gnl\|Hg17\|chr12 (110266783-110266636)

	341-651, gnl\|bosTau2\|chr17 (29462634-29462944)
	341-651, gnl\|canFam2\|chr26 (12023048-12023358)
	341-651, gnl\|Hg17\|chr12 (110263890-110263580)
	341-651, gnl\|hg17\|chr8 (50053070-50053277)
	341-651, gnl\|Mm7\|chr5 (121086902-121087210)
	341-651, gnl\|panTro1\|chr7 (51636773-51636981)
	341-651, gnl\|rheMac2\|chr8 (51496266-51496506)