Non-Coding RNA Search

Ss1.1-Mixn-0037e11.5

Sequence:


               
               TGCTTCCCCGACGCGACGGCCGCCAGCTCGGCCGACGGCGCCAATCCCTTCGCCTGGCCC
GAGGAGAACCTGGGGGACGCCTGTCCCCGCTGGGGGCTGCACCCCGGCGAGCTCGGCAGG
GGGCTGGAGCAGGGCGGGAAGGCCGTGGACAGTGTCGGCCAGGAGAGCGCCCGCGAGGCC
TCGGCCTGCCTGGGCTTCCCGGAGGAGGAGCCCCCGGGGGAGAAGGCCGCGGGGCCACGG
GGTTCCAAGCAGGAGGAGGCGGGCGGGGTGAAGGAGGAGGCGGGCGGGCTGCTGCAGTGC
CCCGAGGGGGGCAAGGCCGACCGGTGGCTGGACGACGGCAGGCACTGCTGCTCCGCCGCC
GACTTCGGGGACCTCCTCCTCCTCCTCCTGCTCCTTCGCCTTGGACGCGACCGGGGCCTC
CCTCCCCACGCTCCCTGGCGGCTCCGGCCTGCAGCCGCGGCCCTGCCTGCCCCTCTCCTC
CACCATGCATCTGGGGCCCGTGGTCTCCAAGGCCCTGAGTACCTCTTGCCTTGTTTGCTG
CCTCTGCCAAAACCCAGCCAACTTCAAGGACCTCGGGGACCTCTGCGGGCCCTACTACCC
CGAACACTGCCTATCCTCAAGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTTCCCCGACGCGACGGCCGCCAGCTCGGCCGACGGCGCCAATCCCTTCGCCTGGCCC
GAGGAGAACCTGGGGGACGCCTGTCCCCGCTGGGGGCTGCACCCCGGCGAGCTCGGCAGG
GGGCTGGAGCAGGGCGGGAAGGCCGTGGACAGTGTCGGCCAGGAGAGCGCCCGCGAGGCC
TCGGCCTGCCTGGGCTTCCCGGAGGAGGAGCCCCCGGGGGAGAAGGCCGCGGGGCCACGG
GGTTCCAAGCAGGAGGAGGCGGGCGGGGTGAAGGAGGAGGCGGGCGGGCTGCTGCAGTGC
CCCGAGGGGGGCAAGGCCGACCGGTGGCTGGACGACGGCAGGCACTGCTGCTCCGCCGCC
GACTTCGGGGACCTCCTCCTCCTCCTCCTGCTCCTTCGCCTTGGACGCGACCGGGGCCTC
CCTCCCCACGCTCCCTGGCGGCTCCGGCCTGCAGCCGCGGCCCTGCCTGCCCCTCTCCTC
CACCATGCATCTGGGGCCCGTGGTCTCCAAGGCCCTGAGTACCTCTTGCCTTGTTTGCTG
CCTCTGCCAAAACCCAGCCAACTTCAAGGACCTCGGGGACCTCTGCGGGCCCTACTACCC
CGAACACTGCCTATCCTCAAGCTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               110-209, - strand, RNAz p=0.727131
               

               
               264-383, - strand, RNAz p=0.6029

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               110-209, - strand, RNAz p=0.727131
               

               
               264-383, - strand, RNAz p=0.6029

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-383, gnl|bosTau2|chr19 (24367719-24368101)
               

               
               1-383, gnl|canFam2|chr5 (44700227-44699667)
               

               
               1-383, gnl|echTel1|scaffold_308167 (3088-3651)
               

               
               1-383, gnl|galGal2|chr14 (6977853-6978434)
               

               
               1-383, gnl|hg17|chr17 (17639142-17639705)
               

               
               1-383, gnl|Hg17|chr17 (17639169-17639554)
               

               
               1-383, gnl|mm7|chr11 (60268773-60269336)
               

               
               1-383, gnl|Mm7|chr11 (60268800-60269185)
               

               
               1-383, gnl|monDom2|scaffold_55 (12947579-12947031)
               

               
               1-383, gnl|panTro1|chr19 (18046172-18046735)
               

               
               1-383, gnl|rheMac2|chr16 (17699818-17700381)
               

               
               1-383, gnl|rn3|chr10 (46463090-46463653)
               

               
               1-383, gnl|xenTro1|scaffold_142 (556333-555810)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-383, gnl|bosTau2|chr19 (24367719-24368101)
               

               
               1-383, gnl|canFam2|chr5 (44700227-44699667)
               

               
               1-383, gnl|echTel1|scaffold_308167 (3088-3651)
               

               
               1-383, gnl|galGal2|chr14 (6977853-6978434)
               

               
               1-383, gnl|hg17|chr17 (17639142-17639705)
               

               
               1-383, gnl|Hg17|chr17 (17639169-17639554)
               

               
               1-383, gnl|mm7|chr11 (60268773-60269336)
               

               
               1-383, gnl|Mm7|chr11 (60268800-60269185)
               

               
               1-383, gnl|monDom2|scaffold_55 (12947579-12947031)
               

               
               1-383, gnl|panTro1|chr19 (18046172-18046735)
               

               
               1-383, gnl|rheMac2|chr16 (17699818-17700381)
               

               
               1-383, gnl|rn3|chr10 (46463090-46463653)
               

               
               1-383, gnl|xenTro1|scaffold_142 (556333-555810)

	110-209, - strand, RNAz p=0.727131
	264-383, - strand, RNAz p=0.6029

	1-383, gnl\|bosTau2\|chr19 (24367719-24368101)
	1-383, gnl\|canFam2\|chr5 (44700227-44699667)
	1-383, gnl\|echTel1\|scaffold_308167 (3088-3651)
	1-383, gnl\|galGal2\|chr14 (6977853-6978434)
	1-383, gnl\|hg17\|chr17 (17639142-17639705)
	1-383, gnl\|Hg17\|chr17 (17639169-17639554)
	1-383, gnl\|mm7\|chr11 (60268773-60269336)
	1-383, gnl\|Mm7\|chr11 (60268800-60269185)
	1-383, gnl\|monDom2\|scaffold_55 (12947579-12947031)
	1-383, gnl\|panTro1\|chr19 (18046172-18046735)
	1-383, gnl\|rheMac2\|chr16 (17699818-17700381)
	1-383, gnl\|rn3\|chr10 (46463090-46463653)
	1-383, gnl\|xenTro1\|scaffold_142 (556333-555810)