Non-Coding RNA Search

Ss1.1-Mixn-0037h03.5

Sequence:


               
               TGTGGAGGCTGGGAGTCCTGGACCGGGTCCCCTCTCATGCCGCTGTTAGGAGCCGAGCAG
GGACGGACAGTAACGAGGATAGGCTCTCACCCTGCGGCGTTATTACGATCCATGGTGTCC
GTCGTGGGACGGGCCGCCTTGCGCGGAGGTGTCGGCCGGGGCTGCGCGCTTTCCGAGGCC
TTCGTCCCGGCTCTCTGGCCTCGTCCGCCTCCGGAGGCGGCACCCTGATCCTTGTGCGCG
TTTCTACAAGGGGGAGACTGGGGCTGGGAGGGCGACAGTCATCCTGAGGTCACCGCCCAC
TGTGCTTGTGGGGGTTCGGCTCTTCTCACAGAACCCGCTCCGTTCCCCGGCTCCTCAACC
CGCTTCTGCTCACAGGATCCCATGGCGGCCGCTGGGCTCATGGACCGGGCTCAGGGCTGT
GTGGCCTTTGAGGATGTGTTCGTGTACTTCTCCCGGGAGGAGTGGGAGCTCCTTGAGGAA
GCTCAGCGACTCCTGTACCGAGACGTGATGCTGGAGAACTTTGCACTTGTGTCATCGCTG
GGTTGTTGGTGTGAAGCAGACTATGAGGAGGCCCCTTCTGAGCAGAGCACTTTTGTAGAA
GGAGTGTCACAGGTCAGGACTCCCAAGGCATTCCCATTTATCCAGAAAGCCCACCCATGT
GAGATATGTGACCCCCTCTTGAAAGACATTTGGCACCTGGCTGAACAGCAGGGATCATGC
CCTGCACAGAAACTGTACACGTGGGACCCCTGTGGACGAGGATTCTTGTGCAGTGACAGC
TTGTATCACCACCAGCAGCAATATACCAGGAAGGACCCCGTCCAAGGGGATGATCATGGG
GCCTCATTTGGGAAGCACTGTGCTGTCCATACTTTAGGGAGACCCTGGACTTGGAGGGAG
GCAGGGCTGGACTTCCCGGCTAGCTCTGGCCTCTTCCAGGACCAAAACATTCACAACGGA
ACAAGTCCATGCAAAGGAGCTGCGTTTGTGGCGTCTTTTCCACAAAGCCCTGGGCTCGGG
CAGCAGCAGGGAGACCGTGATGTACTGATGCTTTTCAGATACAGTGATGACGGGAAAGCC
TTCCTGAACACCTTCCCTCTGCTTGGCAAACAGATGACTCATGGTGAAGTGAGAGACTTT
AGGTGCCTTCCATGTGGGAATATGTCCAAGGAGAAGTCAGCTCTTATTCATCACAGAAAA
ATTCATAGTGGAGAAGCATCCCATGCATGTAGGGAGTGTGGAAAGGCCTTCATTCAGCTG
TCTCACCTAAAAATGCACCAGAAATTTCACAATGGAGAAAGACATTATACTTGCAATGAA
TGTGGGAAAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGGAGGCTGGGAGTCCTGGACCGGGTCCCCTCTCATGCCGCTGTTAGGAGCCGAGCAG
GGACGGACAGTAACGAGGATAGGCTCTCACCCTGCGGCGTTATTACGATCCATGGTGTCC
GTCGTGGGACGGGCCGCCTTGCGCGGAGGTGTCGGCCGGGGCTGCGCGCTTTCCGAGGCC
TTCGTCCCGGCTCTCTGGCCTCGTCCGCCTCCGGAGGCGGCACCCTGATCCTTGTGCGCG
TTTCTACAAGGGGGAGACTGGGGCTGGGAGGGCGACAGTCATCCTGAGGTCACCGCCCAC
TGTGCTTGTGGGGGTTCGGCTCTTCTCACAGAACCCGCTCCGTTCCCCGGCTCCTCAACC
CGCTTCTGCTCACAGGATCCCATGGCGGCCGCTGGGCTCATGGACCGGGCTCAGGGCTGT
GTGGCCTTTGAGGATGTGTTCGTGTACTTCTCCCGGGAGGAGTGGGAGCTCCTTGAGGAA
GCTCAGCGACTCCTGTACCGAGACGTGATGCTGGAGAACTTTGCACTTGTGTCATCGCTG
GGTTGTTGGTGTGAAGCAGACTATGAGGAGGCCCCTTCTGAGCAGAGCACTTTTGTAGAA
GGAGTGTCACAGGTCAGGACTCCCAAGGCATTCCCATTTATCCAGAAAGCCCACCCATGT
GAGATATGTGACCCCCTCTTGAAAGACATTTGGCACCTGGCTGAACAGCAGGGATCATGC
CCTGCACAGAAACTGTACACGTGGGACCCCTGTGGACGAGGATTCTTGTGCAGTGACAGC
TTGTATCACCACCAGCAGCAATATACCAGGAAGGACCCCGTCCAAGGGGATGATCATGGG
GCCTCATTTGGGAAGCACTGTGCTGTCCATACTTTAGGGAGACCCTGGACTTGGAGGGAG
GCAGGGCTGGACTTCCCGGCTAGCTCTGGCCTCTTCCAGGACCAAAACATTCACAACGGA
ACAAGTCCATGCAAAGGAGCTGCGTTTGTGGCGTCTTTTCCACAAAGCCCTGGGCTCGGG
CAGCAGCAGGGAGACCGTGATGTACTGATGCTTTTCAGATACAGTGATGACGGGAAAGCC
TTCCTGAACACCTTCCCTCTGCTTGGCAAACAGATGACTCATGGTGAAGTGAGAGACTTT
AGGTGCCTTCCATGTGGGAATATGTCCAAGGAGAAGTCAGCTCTTATTCATCACAGAAAA
ATTCATAGTGGAGAAGCATCCCATGCATGTAGGGAGTGTGGAAAGGCCTTCATTCAGCTG
TCTCACCTAAAAATGCACCAGAAATTTCACAATGGAGAAAGACATTATACTTGCAATGAA
TGTGGGAAAACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61820677|ref|XP_604482.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61820677|ref|XP_604482.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               861-1060, + strand, RNAz p=0.951076

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               861-1060, + strand, RNAz p=0.951076

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-424, gnl|bosTau2|chr18 (53591816-53591404)
               

               
               1-424, gnl|Hg17|chr19 (62554485-62554887)
               


               
               541-1328, gnl|bosTau2|chr18 (53587755-53586965)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-424, gnl|bosTau2|chr18 (53591816-53591404)
               

               
               1-424, gnl|Hg17|chr19 (62554485-62554887)
               


               
               541-1328, gnl|bosTau2|chr18 (53587755-53586965)

	1-424, gnl\|bosTau2\|chr18 (53591816-53591404)
	1-424, gnl\|Hg17\|chr19 (62554485-62554887)

	541-1328, gnl\|bosTau2\|chr18 (53587755-53586965)