Non-Coding RNA Search

Ss1.1-Mixn-0037l03.5

Sequence:


               
               TGCAGCCCTACCCCTTCGAGCGCATGATCTTCGGGGCCTGCGCGGGCCTCATCGGGCAGT
CGGCCTCTTACCCGCTGGACGTGGTGCGGCGGCGCATGCAGACGGCCGGCGTCACAGGCC
ACCAGCGCACCTCCATCGTGCGCACCATGCGTGCCATCGTGCGGGAGGAGGGCGTGGTGC
GCGGCCTCTACAAAGGCCTGAGCATGAACTGGCTCAAGGGCCCCATCGCCGTGGGCATCA
GCTTCACCACCTTCGACCTCATGCAGATCCTGCTGCGGCACCTGCAGAGCTAGGGGCTGG
TGGGGTCGGCTGCTCTCGAGCTTCAGTTCGCGGTGGACCGCTGACCCCTTCTGTTTCGGA
GCCTAGGGAATGAGAGTGCGCCGGGTTCCACCTGGGAGCCGTGCAGATGCGCCTTGTGGA
ACAAGCAGGGGGACCTGAAGGGCCTGGGCTCGGTGCACGCCCGTCGGAGGAAAAAGCCAG
TGGCCGTTGAAGTTCATTGTTGGGACTGGGGGGCCGAGGCTCATGCGCTTTTCTCTAGTA
GCCTCAGCAGGGCTGGGGCTGCCCACGGAGGGAATTATCTTGAACGCCCTGAGTCAGGAC
TGGTCAGAACTGCCTCCTGGGTCCCTCCTGGTGTACTCTGTGACCTTGGACAGACTCTTG
GTTCTAGTGACTAGCCCTACTGGGCTCAGAGGCAGACCCCGCCGGCCCCTTCTTGTTCTG
AGTCTGTGCTTGTGGGCAGGGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGCCCTACCCCTTCGAGCGCATGATCTTCGGGGCCTGCGCGGGCCTCATCGGGCAGT
CGGCCTCTTACCCGCTGGACGTGGTGCGGCGGCGCATGCAGACGGCCGGCGTCACAGGCC
ACCAGCGCACCTCCATCGTGCGCACCATGCGTGCCATCGTGCGGGAGGAGGGCGTGGTGC
GCGGCCTCTACAAAGGCCTGAGCATGAACTGGCTCAAGGGCCCCATCGCCGTGGGCATCA
GCTTCACCACCTTCGACCTCATGCAGATCCTGCTGCGGCACCTGCAGAGCTAGGGGCTGG
TGGGGTCGGCTGCTCTCGAGCTTCAGTTCGCGGTGGACCGCTGACCCCTTCTGTTTCGGA
GCCTAGGGAATGAGAGTGCGCCGGGTTCCACCTGGGAGCCGTGCAGATGCGCCTTGTGGA
ACAAGCAGGGGGACCTGAAGGGCCTGGGCTCGGTGCACGCCCGTCGGAGGAAAAAGCCAG
TGGCCGTTGAAGTTCATTGTTGGGACTGGGGGGCCGAGGCTCATGCGCTTTTCTCTAGTA
GCCTCAGCAGGGCTGGGGCTGCCCACGGAGGGAATTATCTTGAACGCCCTGAGTCAGGAC
TGGTCAGAACTGCCTCCTGGGTCCCTCCTGGTGTACTCTGTGACCTTGGACAGACTCTTG
GTTCTAGTGACTAGCCCTACTGGGCTCAGAGGCAGACCCCGCCGGCCCCTTCTTGTTCTG
AGTCTGTGCTTGTGGGCAGGGGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2329910|gb|AAB86983.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2329910|gb|AAB86983.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               121-240, - strand, RNAz p=0.657422
               

               
               361-473, - strand, RNAz p=0.868044
               

               
               514-630, + strand, RNAz p=0.786576

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-240, - strand, RNAz p=0.657422
               

               
               361-473, - strand, RNAz p=0.868044
               

               
               514-630, + strand, RNAz p=0.786576

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of AF521885, +
               

               
               3' of NM_178526, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF521885, +
               

               
               3' of NM_178526, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-742, gnl|bosTau2|chr7 (2568267-2568994)
               

               
               2-742, gnl|Hg17|chr19 (19082394-19083114)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-742, gnl|bosTau2|chr7 (2568267-2568994)
               

               
               2-742, gnl|Hg17|chr19 (19082394-19083114)

	121-240, - strand, RNAz p=0.657422
	361-473, - strand, RNAz p=0.868044
	514-630, + strand, RNAz p=0.786576

	2-742, gnl\|bosTau2\|chr7 (2568267-2568994)
	2-742, gnl\|Hg17\|chr19 (19082394-19083114)