Non-Coding RNA Search

Ss1.1-Mixn-0038a06.5

Sequence:


               
               CAGATTGTTTAACAACAGTTTTCTTGTAGCTGGTAAAAGCTATTATTGTCTCTAATATTC
CATATTCTTTGAGTGTTATAAATATGATTTGAACAGACATGGGCAACTTAAAAACAGAGG
GCTTTGAGAGGTTAATTGCTTTTAAATTGAGCCCTCATCTGTAGCATCTTGTCAGATGCT
TGAGAAAATAATGTACTTTAGAGGTTCCTCTTTTAACTTCTTTTTGGTTTTCTGTACTTT
AAGTTGGGGAAAAGATTATTTTCTCTTCCTACTAACTGGGCTACTTGGAAATTTCCACTA
ACTTAAGTACACCAGTGTTCTATATAACTGAGAATTCAAAATTACCCGAGGTTAAGGTAA
TTCACAACTTTTCTCTATTCAGAGAGAAAATGAGATTAATGAAAAAAATATATATATATC
GGAGCACAAATGAATTCTTACCTTTAAATAGGTTAACATCTCTAAGCACCAGCCTCATAG
CTAAGATTTATTTTGATGTGTGAGAGGGAAGAGAGCTAGGAAATGGAAAGAGATGGACTT
TCTTTGTTCTTCCAGCTGTGTTGTCTTTATTTATTATAGTATCTTCCAGAGAGAAGGGGA
GTGTCTTTCAGGTCACATTAATTAGGAAATGCGGAGTTTTTTCCTAATGTTTAAAATATA
GTTCATTTTTGTCTTGTCCTAACTGCTGTTTACACTGTTAGAACTGGAAGACAGGGGCCT
TAAACTGTTCCCCTCTGTTCCTTTTACACAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGATTGTTTAACAACAGTTTTCTTGTAGCTGGTAAAAGCTATTATTGTCTCTAATATTC
CATATTCTTTGAGTGTTATAAATATGATTTGAACAGACATGGGCAACTTAAAAACAGAGG
GCTTTGAGAGGTTAATTGCTTTTAAATTGAGCCCTCATCTGTAGCATCTTGTCAGATGCT
TGAGAAAATAATGTACTTTAGAGGTTCCTCTTTTAACTTCTTTTTGGTTTTCTGTACTTT
AAGTTGGGGAAAAGATTATTTTCTCTTCCTACTAACTGGGCTACTTGGAAATTTCCACTA
ACTTAAGTACACCAGTGTTCTATATAACTGAGAATTCAAAATTACCCGAGGTTAAGGTAA
TTCACAACTTTTCTCTATTCAGAGAGAAAATGAGATTAATGAAAAAAATATATATATATC
GGAGCACAAATGAATTCTTACCTTTAAATAGGTTAACATCTCTAAGCACCAGCCTCATAG
CTAAGATTTATTTTGATGTGTGAGAGGGAAGAGAGCTAGGAAATGGAAAGAGATGGACTT
TCTTTGTTCTTCCAGCTGTGTTGTCTTTATTTATTATAGTATCTTCCAGAGAGAAGGGGA
GTGTCTTTCAGGTCACATTAATTAGGAAATGCGGAGTTTTTTCCTAATGTTTAAAATATA
GTTCATTTTTGTCTTGTCCTAACTGCTGTTTACACTGTTAGAACTGGAAGACAGGGGCCT
TAAACTGTTCCCCTCTGTTCCTTTTACACAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               79-197, + strand, RNAz p=0.909733

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-197, + strand, RNAz p=0.909733

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-749, gnl|bosTau2|chr29 (1888319-1889069)
               

               
               1-749, gnl|Hg17|chr11 (87671662-87670904)
               

               
               1-749, gnl|Mm7|chr7 (84241942-84242619)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-749, gnl|bosTau2|chr29 (1888319-1889069)
               

               
               1-749, gnl|Hg17|chr11 (87671662-87670904)
               

               
               1-749, gnl|Mm7|chr7 (84241942-84242619)

	1-749, gnl\|bosTau2\|chr29 (1888319-1889069)
	1-749, gnl\|Hg17\|chr11 (87671662-87670904)
	1-749, gnl\|Mm7\|chr7 (84241942-84242619)