Non-Coding RNA Search

Ss1.1-Mixn-0038f19.5

Sequence:


               
               CATGAAGCTCCTTTTTCCTATCTTTGCCAGCCTCATGCTACAGTACCAGGTGAACACAGA
ATACTTTGGCTTGGGAAGATGTGTAATGGGTTTGGGGAGATGCAAAGACCACTGTGCCGT
GAATGAAAAAGAGATAGATAAATGCAAAAAGAAAAAGTGTTGTATTGGACCAAAAGGGAT
TCAATTGATAAAAAGCTACCTGCAAAATGAAATGATCCGCACACTTGAAGAGGTCGCCAA
GAAAAATATCACCAAGAATTCCAAGGTTGTGACGCCATCAAAATATCGTCCTTTATCTCA
TCTCCCCGAAATTAAAAGTACCAACCCTTTCGCCAGCATCAACACCACCATCATCCCAAA
TGGCACCACTGTGAACTCTACCACCACCAACTCCACGACCTCCAGAAGGAGCACACACCC
CGCTACTTCTACCAAGAGTGACACCAAAAAAAGAAGAGATTCACCCACGGAGTCCCCCCC
TGCAGACAGCTCCCCCATAGACCCTGCCGACAGCATGACTTGAGCTGGAGGGAGCAGATG
AGCAGGGATGTGGGTCTCTTCCCTAAAACAGCAAGTTCCTCTCTATCTTCGCTGTCTATA
AAATGAGACAAAGAACTGTTCCCTCTGTCATCCATCGTTCAATAAACACTGTTTAATCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGAAGCTCCTTTTTCCTATCTTTGCCAGCCTCATGCTACAGTACCAGGTGAACACAGA
ATACTTTGGCTTGGGAAGATGTGTAATGGGTTTGGGGAGATGCAAAGACCACTGTGCCGT
GAATGAAAAAGAGATAGATAAATGCAAAAAGAAAAAGTGTTGTATTGGACCAAAAGGGAT
TCAATTGATAAAAAGCTACCTGCAAAATGAAATGATCCGCACACTTGAAGAGGTCGCCAA
GAAAAATATCACCAAGAATTCCAAGGTTGTGACGCCATCAAAATATCGTCCTTTATCTCA
TCTCCCCGAAATTAAAAGTACCAACCCTTTCGCCAGCATCAACACCACCATCATCCCAAA
TGGCACCACTGTGAACTCTACCACCACCAACTCCACGACCTCCAGAAGGAGCACACACCC
CGCTACTTCTACCAAGAGTGACACCAAAAAAAGAAGAGATTCACCCACGGAGTCCCCCCC
TGCAGACAGCTCCCCCATAGACCCTGCCGACAGCATGACTTGAGCTGGAGGGAGCAGATG
AGCAGGGATGTGGGTCTCTTCCCTAAAACAGCAAGTTCCTCTCTATCTTCGCTGTCTATA
AAATGAGACAAAGAACTGTTCCCTCTGTCATCCATCGTTCAATAAACACTGTTTAATCAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               525-644, - strand, RNAz p=0.914877

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               525-644, - strand, RNAz p=0.914877

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               57-660, gnl|bosTau2|chr13 (42044318-42043722)
               

               
               57-660, gnl|canFam2|chr24 (23585174-23584391)
               

               
               57-660, gnl|dasNov1|scaffold_6480 (17775-18541)
               

               
               57-660, gnl|echTel1|scaffold_323232 (38709-37902)
               

               
               57-660, gnl|hg17|chr20 (157665-158493)
               

               
               57-660, gnl|Hg17|chr20 (157916-158522)
               

               
               57-660, gnl|loxAfr1|scaffold_1810 (49985-49197)
               

               
               57-660, gnl|mm7|chr2 (152200651-152199886)
               

               
               57-660, gnl|Mm7|chr2 (152200452-152199856)
               

               
               57-660, gnl|oryCun1|scaffold_172812 (5148-4345)
               

               
               57-660, gnl|panTro1|chr21 (228032-228860)
               

               
               57-660, gnl|rheMac2|chr10 (33453948-33454752)
               

               
               57-660, gnl|rn3|chr3 (142686326-142685586)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               57-660, gnl|bosTau2|chr13 (42044318-42043722)
               

               
               57-660, gnl|canFam2|chr24 (23585174-23584391)
               

               
               57-660, gnl|dasNov1|scaffold_6480 (17775-18541)
               

               
               57-660, gnl|echTel1|scaffold_323232 (38709-37902)
               

               
               57-660, gnl|hg17|chr20 (157665-158493)
               

               
               57-660, gnl|Hg17|chr20 (157916-158522)
               

               
               57-660, gnl|loxAfr1|scaffold_1810 (49985-49197)
               

               
               57-660, gnl|mm7|chr2 (152200651-152199886)
               

               
               57-660, gnl|Mm7|chr2 (152200452-152199856)
               

               
               57-660, gnl|oryCun1|scaffold_172812 (5148-4345)
               

               
               57-660, gnl|panTro1|chr21 (228032-228860)
               

               
               57-660, gnl|rheMac2|chr10 (33453948-33454752)
               

               
               57-660, gnl|rn3|chr3 (142686326-142685586)

	57-660, gnl\|bosTau2\|chr13 (42044318-42043722)
	57-660, gnl\|canFam2\|chr24 (23585174-23584391)
	57-660, gnl\|dasNov1\|scaffold_6480 (17775-18541)
	57-660, gnl\|echTel1\|scaffold_323232 (38709-37902)
	57-660, gnl\|hg17\|chr20 (157665-158493)
	57-660, gnl\|Hg17\|chr20 (157916-158522)
	57-660, gnl\|loxAfr1\|scaffold_1810 (49985-49197)
	57-660, gnl\|mm7\|chr2 (152200651-152199886)
	57-660, gnl\|Mm7\|chr2 (152200452-152199856)
	57-660, gnl\|oryCun1\|scaffold_172812 (5148-4345)
	57-660, gnl\|panTro1\|chr21 (228032-228860)
	57-660, gnl\|rheMac2\|chr10 (33453948-33454752)
	57-660, gnl\|rn3\|chr3 (142686326-142685586)