Non-Coding RNA Search

Ss1.1-Mixn-0039f24.5

Sequence:


               
               GGTCTACAGGGACACAGCTGAGCCCAACTGGAACGAGGAGTTTGAGATCGAGCTGGAAGG
CTCCCAGACCTTGAGGATTCTGTGCTACGAAAAGTGTTACAACAAAACAAAGATGACCAA
GGAGGACGGCGAGAGTGCAGACAGAATCATGGGGAAGGGCCAGGTGCAGCTGGACCCCCA
GGCCCTGCAGGATAGAGACTGGCAGCGGACAGTCATTGCCATGAACGGGATTGAAGTGAA
GCTCTCAGTAAAGTTCACCAGCAGGGAGTTCAGCTTGAAGAGGATGCCTTCCCGGAAACA
GACAGGTGTCTTCGGAGTCAAGATTGCCGTGGTCACCAAGAGGGAGAGGTCCAAGGTGCC
CTATATTGTGCGCCAGTGTGTGGAGGAGATCGAGCGCCGGGGCATGGAGGAAGTGGGCAT
CTACCGCGTGTCTGGCGTGGCCACGGACATCCAGGCACTGAAGGCAGCCTTTGACGTCAA
CAACAAGGACGTGTCGGTGATGATGAGTGAGATGGACGTGAACGCCATCGCTGGGACACT
GAAGCTCTACTTCCGGGAGCTGCCCGAGCCCCTCTTCACTGACGAGTTCTACCCCAACTT
CGCCGAGGGCATCGCGCTCTCAGACCCTGTTGCAAAGGAGAGCTGCATGCTTAACTTGCT
CCTGTCCCTCCCGGAGGCCAACCTGTTGACCTTTCTCTTCCTTCTGGACCACCTGAAAAG
GGTGGCAGAAAAGGAGACAGTAAACAAGATGTCCCTGCACAACCTCGCCACGGTGTTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCTACAGGGACACAGCTGAGCCCAACTGGAACGAGGAGTTTGAGATCGAGCTGGAAGG
CTCCCAGACCTTGAGGATTCTGTGCTACGAAAAGTGTTACAACAAAACAAAGATGACCAA
GGAGGACGGCGAGAGTGCAGACAGAATCATGGGGAAGGGCCAGGTGCAGCTGGACCCCCA
GGCCCTGCAGGATAGAGACTGGCAGCGGACAGTCATTGCCATGAACGGGATTGAAGTGAA
GCTCTCAGTAAAGTTCACCAGCAGGGAGTTCAGCTTGAAGAGGATGCCTTCCCGGAAACA
GACAGGTGTCTTCGGAGTCAAGATTGCCGTGGTCACCAAGAGGGAGAGGTCCAAGGTGCC
CTATATTGTGCGCCAGTGTGTGGAGGAGATCGAGCGCCGGGGCATGGAGGAAGTGGGCAT
CTACCGCGTGTCTGGCGTGGCCACGGACATCCAGGCACTGAAGGCAGCCTTTGACGTCAA
CAACAAGGACGTGTCGGTGATGATGAGTGAGATGGACGTGAACGCCATCGCTGGGACACT
GAAGCTCTACTTCCGGGAGCTGCCCGAGCCCCTCTTCACTGACGAGTTCTACCCCAACTT
CGCCGAGGGCATCGCGCTCTCAGACCCTGTTGCAAAGGAGAGCTGCATGCTTAACTTGCT
CCTGTCCCTCCCGGAGGCCAACCTGTTGACCTTTCTCTTCCTTCTGGACCACCTGAAAAG
GGTGGCAGAAAAGGAGACAGTAAACAAGATGTCCCTGCACAACCTCGCCACGGTGTTTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12805441|gb|AAH02193.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12805441|gb|AAH02193.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               148-267, + strand, RNAz p=0.827599

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               148-267, + strand, RNAz p=0.827599

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               28-757, gnl|bosTau2|chr12 (2224039-2223323)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-757, gnl|bosTau2|chr12 (2224039-2223323)