Non-Coding RNA Search

Ss1.1-Mixn-0039l11.5

Sequence:


               
               TGAGTCAAGTTGCCAAGAAGCATCCAGAAGATCCCAAGGGAGGAAAGGAAGGTGGCTGAT
AATGATTGTCTTCCTAATATGCAAGTTCTCACTTCCTACTTCCAGCATCCGGCCTTCCTG
ACCTTGCTTTTTTTCTCTTTCCCCGGGGCAAAAGGGGAAGTTGCCTGCTGCCTCCCGGGT
TCGATCCTGGCAGCTCCAGCTTCCTTGCTGGCCAGAGGCCTGAGGCGAATCATCCATGGG
ACGGGAAAGTTGCTGAGATGCCATGGAATGCCCTTCTCGTCACTGGCCGTTGGGGCCAGT
TGCCCGGTTCTGGGTTCGTGGTGATGGCATGGAGCCTGAAGGGCACCGGCCGAGTCTCCA
GGCAGCTGCAGGCAGCTCCAGCCCTGGTCCTGAGGGTCCCCCTCACCACAGTCACGTGCC
TTAGTAACCGTGCCCAGGAAGCATCCTGCTGCTTGCTGCGCTGCTGCTTTTCCTACTTCC
ACCCTCCCCTGTCCCCCTCCACCCATCACGGCTGATGGACCACTCCTTGACCTTCCTGGC
ACCCAGCAGAAGGCCTGAGAGACAGTCAGCACACATACACCCCAGCTTGCTGCTGGGGGT
AGTTTGGGAGCATCCTGGCTCCGGGGCCCTGGTGACCTCGGGGGAGTGGGCCCGGCAGGC
CAGATGCTTCTTTCTGCTGGGGCGGCAGAGCTCAGCCGGGCGGCTGCCTCTTCAGACGGT
GCGGCATTAAGGAGCGCTTGTCTCTGTTTTTGAAGCACTGCATCTCTGCTCCTCCCCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGTCAAGTTGCCAAGAAGCATCCAGAAGATCCCAAGGGAGGAAAGGAAGGTGGCTGAT
AATGATTGTCTTCCTAATATGCAAGTTCTCACTTCCTACTTCCAGCATCCGGCCTTCCTG
ACCTTGCTTTTTTTCTCTTTCCCCGGGGCAAAAGGGGAAGTTGCCTGCTGCCTCCCGGGT
TCGATCCTGGCAGCTCCAGCTTCCTTGCTGGCCAGAGGCCTGAGGCGAATCATCCATGGG
ACGGGAAAGTTGCTGAGATGCCATGGAATGCCCTTCTCGTCACTGGCCGTTGGGGCCAGT
TGCCCGGTTCTGGGTTCGTGGTGATGGCATGGAGCCTGAAGGGCACCGGCCGAGTCTCCA
GGCAGCTGCAGGCAGCTCCAGCCCTGGTCCTGAGGGTCCCCCTCACCACAGTCACGTGCC
TTAGTAACCGTGCCCAGGAAGCATCCTGCTGCTTGCTGCGCTGCTGCTTTTCCTACTTCC
ACCCTCCCCTGTCCCCCTCCACCCATCACGGCTGATGGACCACTCCTTGACCTTCCTGGC
ACCCAGCAGAAGGCCTGAGAGACAGTCAGCACACATACACCCCAGCTTGCTGCTGGGGGT
AGTTTGGGAGCATCCTGGCTCCGGGGCCCTGGTGACCTCGGGGGAGTGGGCCCGGCAGGC
CAGATGCTTCTTTCTGCTGGGGCGGCAGAGCTCAGCCGGGCGGCTGCCTCTTCAGACGGT
GCGGCATTAAGGAGCGCTTGTCTCTGTTTTTGAAGCACTGCATCTCTGCTCCTCCCCTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               86-472, + strand, RNAz p=0.99852

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               86-472, + strand, RNAz p=0.99852

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               250-472, BP279428 Sugano cDNA library, KG-1-C Homo sapiens cDNA clone 
(dbj|BP279428.1|), blast E-value=9e-33, identity=83.86% 
               

               
               250-472, DA054480 BRACE2 Homo sapiens cDNA clone BRACE2000277 5', mRNA 
(dbj|DA054480.1|), blast E-value=9e-33, identity=83.86% 
               

               
               250-472, DB127669 THYMU2 Homo sapiens cDNA clone THYMU2037670 5', mRNA 
(dbj|DB127669.1|), blast E-value=9e-33, identity=83.86% 
               

               
               250-472, AGENCOURT_8217672 Lupski_sympathetic_trunk Homo sapiens cDNA clone 
(gb|BQ717753.1|), blast E-value=9e-33, identity=83.86% 
               

               
               253-469, UMC-bemiv_0B02-030-c02 Metaphase II stage oocyte bemiv Bos taurus 
(gb|DN823039.1|), blast E-value=6e-37, identity=85.78% 
               

               
               253-469, UMC-bemiv_0B02-030-h02 Metaphase II stage oocyte bemiv Bos taurus 
(gb|DN823092.1|), blast E-value=6e-37, identity=85.78%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               250-472, BP279428 Sugano cDNA library, KG-1-C Homo sapiens cDNA clone 
(dbj|BP279428.1|), blast E-value=9e-33, identity=83.86% 
               

               
               250-472, DA054480 BRACE2 Homo sapiens cDNA clone BRACE2000277 5', mRNA 
(dbj|DA054480.1|), blast E-value=9e-33, identity=83.86% 
               

               
               250-472, DB127669 THYMU2 Homo sapiens cDNA clone THYMU2037670 5', mRNA 
(dbj|DB127669.1|), blast E-value=9e-33, identity=83.86% 
               

               
               250-472, AGENCOURT_8217672 Lupski_sympathetic_trunk Homo sapiens cDNA clone 
(gb|BQ717753.1|), blast E-value=9e-33, identity=83.86% 
               

               
               253-469, UMC-bemiv_0B02-030-c02 Metaphase II stage oocyte bemiv Bos taurus 
(gb|DN823039.1|), blast E-value=6e-37, identity=85.78% 
               

               
               253-469, UMC-bemiv_0B02-030-h02 Metaphase II stage oocyte bemiv Bos taurus 
(gb|DN823092.1|), blast E-value=6e-37, identity=85.78%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014734, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014734, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-526, gnl|bosTau2|chr10 (55948955-55948428)
               

               
               8-526, gnl|Hg17|chr14 (69248183-69248706)
               

               
               8-526, gnl|Mm7|chr12 (78840569-78841042)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-526, gnl|bosTau2|chr10 (55948955-55948428)
               

               
               8-526, gnl|Hg17|chr14 (69248183-69248706)
               

               
               8-526, gnl|Mm7|chr12 (78840569-78841042)

	250-472, BP279428 Sugano cDNA library, KG-1-C Homo sapiens cDNA clone (dbj\|BP279428.1\|), blast E-value=9e-33, identity=83.86%
	250-472, DA054480 BRACE2 Homo sapiens cDNA clone BRACE2000277 5', mRNA (dbj\|DA054480.1\|), blast E-value=9e-33, identity=83.86%
	250-472, DB127669 THYMU2 Homo sapiens cDNA clone THYMU2037670 5', mRNA (dbj\|DB127669.1\|), blast E-value=9e-33, identity=83.86%
	250-472, AGENCOURT_8217672 Lupski_sympathetic_trunk Homo sapiens cDNA clone (gb\|BQ717753.1\|), blast E-value=9e-33, identity=83.86%
	253-469, UMC-bemiv_0B02-030-c02 Metaphase II stage oocyte bemiv Bos taurus (gb\|DN823039.1\|), blast E-value=6e-37, identity=85.78%
	253-469, UMC-bemiv_0B02-030-h02 Metaphase II stage oocyte bemiv Bos taurus (gb\|DN823092.1\|), blast E-value=6e-37, identity=85.78%

	8-526, gnl\|bosTau2\|chr10 (55948955-55948428)
	8-526, gnl\|Hg17\|chr14 (69248183-69248706)
	8-526, gnl\|Mm7\|chr12 (78840569-78841042)