Non-Coding RNA Search

Ss1.1-Mixn-0039o12.5

Sequence:


               
               CCCCTACAGTGCACACAACTCTACAGAGTTCCTCATCTACCAAAGAGGGGTCGAGGTTGG
GTGTTGGGGCTTGTGCATCAACTCCGTGTTTTCCTCACTTTACTCTTACTTTCAGAAAGC
TTTGGTTCCCTACGTCGGATTAAAGGGTCTTTACTTCATGGGGTATTTGCTGTTTGGCCT
GGGGACGGGATTTATCGGGCTCTTCCCAAATGTCTACTCCACCCTGGTCATGTGCACCTC
GTTTGGCGTGATGTCCAGCACCCTGTACACCGTGCCCTTTAACCTCATTAGATGAAATGC
TGTTCCTGTGCTTCCCTTGCAGAGGCAGCAGGCCCAGGGCGGGGGCCTGGACAGCAGCCG
GAGGGGGCAGGGCCTGGACTGCGCTGCTCTCACCTGCATGGTGCAGCTGGCACAGATCCT
GGTCGGAGGCGGCCTGGGCTTTCTGGTCAACGTGGTCGGGAGCGTCGTCGTCGTGGTGAT
CACGGCCTCTGCGGCGGCACTGATCGGCTGTTGCTTTGTGGCTCTCTTTGTTAGATATAT
AGATTAGGTCAATAAAGAGACCTCATCCCTAACCTCAGACACTGTGGAGTACACGGCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCTACAGTGCACACAACTCTACAGAGTTCCTCATCTACCAAAGAGGGGTCGAGGTTGG
GTGTTGGGGCTTGTGCATCAACTCCGTGTTTTCCTCACTTTACTCTTACTTTCAGAAAGC
TTTGGTTCCCTACGTCGGATTAAAGGGTCTTTACTTCATGGGGTATTTGCTGTTTGGCCT
GGGGACGGGATTTATCGGGCTCTTCCCAAATGTCTACTCCACCCTGGTCATGTGCACCTC
GTTTGGCGTGATGTCCAGCACCCTGTACACCGTGCCCTTTAACCTCATTAGATGAAATGC
TGTTCCTGTGCTTCCCTTGCAGAGGCAGCAGGCCCAGGGCGGGGGCCTGGACAGCAGCCG
GAGGGGGCAGGGCCTGGACTGCGCTGCTCTCACCTGCATGGTGCAGCTGGCACAGATCCT
GGTCGGAGGCGGCCTGGGCTTTCTGGTCAACGTGGTCGGGAGCGTCGTCGTCGTGGTGAT
CACGGCCTCTGCGGCGGCACTGATCGGCTGTTGCTTTGTGGCTCTCTTTGTTAGATATAT
AGATTAGGTCAATAAAGAGACCTCATCCCTAACCTCAGACACTGTGGAGTACACGGCAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61838415|ref|XP_611953.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61838415|ref|XP_611953.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               289-447, + strand, RNAz p=0.872449

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               289-447, + strand, RNAz p=0.872449

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_016180, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_016180, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               289-587, gnl|bosTau2|chr20 (26019550-26019848)
               

               
               289-587, gnl|Hg17|chr5 (33980768-33980470)
               

               
               289-587, gnl|Mm7|chr15 (11085970-11086268)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               289-587, gnl|bosTau2|chr20 (26019550-26019848)
               

               
               289-587, gnl|Hg17|chr5 (33980768-33980470)
               

               
               289-587, gnl|Mm7|chr15 (11085970-11086268)

	289-587, gnl\|bosTau2\|chr20 (26019550-26019848)
	289-587, gnl\|Hg17\|chr5 (33980768-33980470)
	289-587, gnl\|Mm7\|chr15 (11085970-11086268)