Non-Coding RNA Search

Ss1.1-Mus1-POSM0100007_H03.3

Sequence:


               
               CCCTCCTTCCCCACCCACACCCCGGGTCTCTGGATGCCCCCCGGCACCCACCTCTATTCA
GGGAAGAGTCTGACGATTTCACACAGGGACAGAGTGTATCCTTTATTATTATTATTAAGT
AGCATCGAATTTTAAAAGAGGAGTGTGGTGAGGGCAGTACGTAGTCCAAAGGTGCTAATG
GGGCAGTTGGGGGCCTGGTGACACCCATGGGGGTGATGTCCTCTGCCTGGGGAGCCTTCC
TGGGGTATTGAGGGTTTCCAGGCAACCATCACTTCAGGATGCAGCCTGGCTGCCACAAAG
CTTTATTTGAGCGAATTATTTTTTCACTTTAGGAGACTTGTTCGGGTTTGTTTCTGTTTC
ACTTGCCCACGGGCGCGCGTGCATGTGCGTGTGCGTGTGCGTGTGTGTGTGTGTGTGTGT
GATGTGCCATTTCTTAGCTTGGGGCCTTGGGGGTGGCCTCGTAACTGGTCGGGTGGGTGT
GGGGCATTTACTCCCTCTGCCTCAGCCTGTCCTCCTCCAGGAACGACGATGCTGCTGCTG
CTGCTGCTGCCGCCACTACCGCTGGGCATCTCCTATGTCTCCAACGCTCTCTGCCCAGAC
TGATTTTTAACTGGAAACTGTCACAGCAGTGGGATACCAGAGCCCCAGACAGCACTGTCT
CCCGCCACTTTAATGTGAATTTGACTGACAAATGAGGAGCGTTTCTAGTAAGGTTTGTTG
TTCAACATCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTCCTTCCCCACCCACACCCCGGGTCTCTGGATGCCCCCCGGCACCCACCTCTATTCA
GGGAAGAGTCTGACGATTTCACACAGGGACAGAGTGTATCCTTTATTATTATTATTAAGT
AGCATCGAATTTTAAAAGAGGAGTGTGGTGAGGGCAGTACGTAGTCCAAAGGTGCTAATG
GGGCAGTTGGGGGCCTGGTGACACCCATGGGGGTGATGTCCTCTGCCTGGGGAGCCTTCC
TGGGGTATTGAGGGTTTCCAGGCAACCATCACTTCAGGATGCAGCCTGGCTGCCACAAAG
CTTTATTTGAGCGAATTATTTTTTCACTTTAGGAGACTTGTTCGGGTTTGTTTCTGTTTC
ACTTGCCCACGGGCGCGCGTGCATGTGCGTGTGCGTGTGCGTGTGTGTGTGTGTGTGTGT
GATGTGCCATTTCTTAGCTTGGGGCCTTGGGGGTGGCCTCGTAACTGGTCGGGTGGGTGT
GGGGCATTTACTCCCTCTGCCTCAGCCTGTCCTCCTCCAGGAACGACGATGCTGCTGCTG
CTGCTGCTGCCGCCACTACCGCTGGGCATCTCCTATGTCTCCAACGCTCTCTGCCCAGAC
TGATTTTTAACTGGAAACTGTCACAGCAGTGGGATACCAGAGCCCCAGACAGCACTGTCT
CCCGCCACTTTAATGTGAATTTGACTGACAAATGAGGAGCGTTTCTAGTAAGGTTTGTTG
TTCAACATCCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               184-303, + strand, RNAz p=0.513711

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               184-303, + strand, RNAz p=0.513711

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_080862, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_080862, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-724, gnl|bosTau2|chr1 (80003554-80002833)
               

               
               5-724, gnl|Hg17|chr3 (142349457-142350143)
               

               
               5-724, gnl|Mm7|chr9 (96585779-96585133)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-724, gnl|bosTau2|chr1 (80003554-80002833)
               

               
               5-724, gnl|Hg17|chr3 (142349457-142350143)
               

               
               5-724, gnl|Mm7|chr9 (96585779-96585133)

	5-724, gnl\|bosTau2\|chr1 (80003554-80002833)
	5-724, gnl\|Hg17\|chr3 (142349457-142350143)
	5-724, gnl\|Mm7\|chr9 (96585779-96585133)