Non-Coding RNA Search

Ss1.1-Mus1-POSM0100011_B01F.5

Sequence:


               
               AGAGGATGACAAGGACTCGGAGGCCGAGGTGGAGGTGGAAAGCAGAGAGGAGTTCACCTC
CTCCCTGTCCTCGCTCTCTTCTCCGTCCTTTACCTCATCCAGCTCGGCCAAGGACCTGAG
CTCCCCCGGCGTGCTCGCCCCGCCCGCGGTTCCCCCCGCCCCCGATGCCACGGCCGCCGC
CGACGCCCCCAGCAGCGGGCTGGAGGCAGAGCTGGAGCACCTGCGGCAGGCCTTGGAGGG
CGGCCTGGACACCAAGGAAGCCAAAGAGAAGTTCCTGCACGAGGTGGTGAAGATGCGCGT
GAAGCAGGAGGAGAAGCTGAGCGCTGCGTTGCAGGCCAAGCGCAGCCTCCACCAGGAGCT
GGAGTTTCTGCGCGTGGCCAAGAAGGAGAAGCTGCGGGAAGCCACGGAGGCGAAGCGCAG
CCTCAGGAAGGAGATCGAGCGCCTGCGAGCCGAGAACGAGAAGAAAAAAAAAAAAGCGGC
CCGGACGCGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGGATGACAAGGACTCGGAGGCCGAGGTGGAGGTGGAAAGCAGAGAGGAGTTCACCTC
CTCCCTGTCCTCGCTCTCTTCTCCGTCCTTTACCTCATCCAGCTCGGCCAAGGACCTGAG
CTCCCCCGGCGTGCTCGCCCCGCCCGCGGTTCCCCCCGCCCCCGATGCCACGGCCGCCGC
CGACGCCCCCAGCAGCGGGCTGGAGGCAGAGCTGGAGCACCTGCGGCAGGCCTTGGAGGG
CGGCCTGGACACCAAGGAAGCCAAAGAGAAGTTCCTGCACGAGGTGGTGAAGATGCGCGT
GAAGCAGGAGGAGAAGCTGAGCGCTGCGTTGCAGGCCAAGCGCAGCCTCCACCAGGAGCT
GGAGTTTCTGCGCGTGGCCAAGAAGGAGAAGCTGCGGGAAGCCACGGAGGCGAAGCGCAG
CCTCAGGAAGGAGATCGAGCGCCTGCGAGCCGAGAACGAGAAGAAAAAAAAAAAAGCGGC
CCGGACGCGTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|386340|gb|AAB27223.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|386340|gb|AAB27223.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               255-356, - strand, RNAz p=0.764816

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               255-356, - strand, RNAz p=0.764816

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               54-356, gnl|bosTau2|chr16 (36625463-36625161)
               

               
               54-356, gnl|Hg17|chr1 (2267894-2268187)
               

               
               54-356, gnl|Mm7|chr4 (154149122-154148813)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               54-356, gnl|bosTau2|chr16 (36625463-36625161)
               

               
               54-356, gnl|Hg17|chr1 (2267894-2268187)
               

               
               54-356, gnl|Mm7|chr4 (154149122-154148813)

	54-356, gnl\|bosTau2\|chr16 (36625463-36625161)
	54-356, gnl\|Hg17\|chr1 (2267894-2268187)
	54-356, gnl\|Mm7\|chr4 (154149122-154148813)