Non-Coding RNA Search

Ss1.1-OvF2-UMC-p2mm2-001-g11.3

Sequence:


               
               GGTGTGGCCGCAGGACAAGGACACGGGGTCTGAGAGAAATCCATGGCACTTCCGGCACTT
GAAGCCGTCCCACACCTCGGTGGCCTCGGCAGCCGTCGCCACCCCCGCGTCTTCCGCCGC
CACCGCGCAGCTCACCGCGAGGCTCCCGTCCGGGGGCTCCGGAGCCTCGCCTCGCGGGAC
GTTCTCGGCCAGGCAGCGCACCAGCTGCTCCAGCTGCTCAGCCACCAGCTGCTGCCGCTC
TGAGAGCTGTCGGTACACCTCGAGGGCTTCCCGGAGGCGCCCCCCAGACGCCAGGGCATC
GGCCTGCTTGAGCAGGACTTTACACTCGGGCGTCGAGGCCCTCGGAGGCTGCTCCTGCCC
TGGCGGCCGCGTCGGTAGAGGTGCGGGGCCTTCTCTAGCCGCCTCCGGGTGGGGGCCCGT
GTCTCCGCGGGCCGCTGATGCCGCCGGCTCAGCCAGCTCCAAGTTGTTGCTGCCGAGCTC
GGCGGGCAAGCTCAGCATCTGCCCAGTCTGAAATGAATCCATAGGGAGAGGGTCACGCGC
GGAAAGAGGCGTCTAGGGGCCGGGGACGCGGAGCAGGGAGCGGCGGCTGGAGGGAATCGG
GGCTGCCACGGCCGCCGCTCTGCCGCGCGCCGCTCCCCGCCGCGCCTCTGCGAGCTCCAT
GCCTGCTGCCCCGCGCCGCCTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGTGGCCGCAGGACAAGGACACGGGGTCTGAGAGAAATCCATGGCACTTCCGGCACTT
GAAGCCGTCCCACACCTCGGTGGCCTCGGCAGCCGTCGCCACCCCCGCGTCTTCCGCCGC
CACCGCGCAGCTCACCGCGAGGCTCCCGTCCGGGGGCTCCGGAGCCTCGCCTCGCGGGAC
GTTCTCGGCCAGGCAGCGCACCAGCTGCTCCAGCTGCTCAGCCACCAGCTGCTGCCGCTC
TGAGAGCTGTCGGTACACCTCGAGGGCTTCCCGGAGGCGCCCCCCAGACGCCAGGGCATC
GGCCTGCTTGAGCAGGACTTTACACTCGGGCGTCGAGGCCCTCGGAGGCTGCTCCTGCCC
TGGCGGCCGCGTCGGTAGAGGTGCGGGGCCTTCTCTAGCCGCCTCCGGGTGGGGGCCCGT
GTCTCCGCGGGCCGCTGATGCCGCCGGCTCAGCCAGCTCCAAGTTGTTGCTGCCGAGCTC
GGCGGGCAAGCTCAGCATCTGCCCAGTCTGAAATGAATCCATAGGGAGAGGGTCACGCGC
GGAAAGAGGCGTCTAGGGGCCGGGGACGCGGAGCAGGGAGCGGCGGCTGGAGGGAATCGG
GGCTGCCACGGCCGCCGCTCTGCCGCGCGCCGCTCCCCGCCGCGCCTCTGCGAGCTCCAT
GCCTGCTGCCCCGCGCCGCCTAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               166-505, - strand, RNAz p=0.955844

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               166-505, - strand, RNAz p=0.955844

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_024778, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_024778, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               51-684, gnl|bosTau2|chr11 (67228734-67229374)
               

               
               51-684, gnl|Hg17|chrX (117891103-117890463)
               

               
               51-684, gnl|Mm7|chrX (31088823-31088172)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-684, gnl|bosTau2|chr11 (67228734-67229374)
               

               
               51-684, gnl|Hg17|chrX (117891103-117890463)
               

               
               51-684, gnl|Mm7|chrX (31088823-31088172)

	51-684, gnl\|bosTau2\|chr11 (67228734-67229374)
	51-684, gnl\|Hg17\|chrX (117891103-117890463)
	51-684, gnl\|Mm7\|chrX (31088823-31088172)