Non-Coding RNA Search

Ss1.1-OvF2-UMC-pd0fol-012-d01.3

Sequence:


               
               AGAGAAAAATGCTTCCAGGCATGGAGTCTTATTTACTGGCAATTCAGTGCAAAAACAGCT
TTGTGTTAATTGTTGGCAAATAGACTGTGCAAACAGTCCCCACTGGTGATCCCAACACCA
ATCACACTGTGCCTGAGCAAAGAGACAGCCAAATTTGAGCCATCACAGATGTCTGATGAG
ATTATCCATTTCATTTGAGCTGTGTGAGATTCCGACACTACATCTCTGGGAGATGGACAA
AAGGGAGCTTCCCTGGTAAATCAGGCTGTAATTCTCTTCCCACTCCCAAGTAGATCACCA
CTACCACATAGTGCATTACCTGGCATCATCACATCTTTCCAGAGGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGAAAAATGCTTCCAGGCATGGAGTCTTATTTACTGGCAATTCAGTGCAAAAACAGCT
TTGTGTTAATTGTTGGCAAATAGACTGTGCAAACAGTCCCCACTGGTGATCCCAACACCA
ATCACACTGTGCCTGAGCAAAGAGACAGCCAAATTTGAGCCATCACAGATGTCTGATGAG
ATTATCCATTTCATTTGAGCTGTGTGAGATTCCGACACTACATCTCTGGGAGATGGACAA
AAGGGAGCTTCCCTGGTAAATCAGGCTGTAATTCTCTTCCCACTCCCAAGTAGATCACCA
CTACCACATAGTGCATTACCTGGCATCATCACATCTTTCCAGAGGAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               6-120, - strand, RNAz p=0.746749

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               6-120, - strand, RNAz p=0.746749

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               3-347, gnl|bosTau2|chr2 (24247632-24247984)
               

               
               3-347, gnl|canFam2|chr36 (12724152-12724719)
               

               
               3-347, gnl|echTel1|scaffold_293659 (123973-123395)
               

               
               3-347, gnl|hg17|chr2 (165177298-165177876)
               

               
               3-347, gnl|Hg17|chr2 (165177525-165177870)
               

               
               3-347, gnl|loxAfr1|scaffold_10780 (12647-13224)
               

               
               3-347, gnl|mm7|chr2 (64845800-64846339)
               

               
               3-347, gnl|Mm7|chr2 (64846007-64846333)
               

               
               3-347, gnl|monDom2|scaffold_2 (60358743-60359364)
               

               
               3-347, gnl|oryCun1|scaffold_209716 (157240-156670)
               

               
               3-347, gnl|panTro1|chr13 (54575147-54575725)
               

               
               3-347, gnl|rheMac2|chr12 (28135419-28136007)
               

               
               3-347, gnl|rn3|chr3 (46730920-46731459)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-347, gnl|bosTau2|chr2 (24247632-24247984)
               

               
               3-347, gnl|canFam2|chr36 (12724152-12724719)
               

               
               3-347, gnl|echTel1|scaffold_293659 (123973-123395)
               

               
               3-347, gnl|hg17|chr2 (165177298-165177876)
               

               
               3-347, gnl|Hg17|chr2 (165177525-165177870)
               

               
               3-347, gnl|loxAfr1|scaffold_10780 (12647-13224)
               

               
               3-347, gnl|mm7|chr2 (64845800-64846339)
               

               
               3-347, gnl|Mm7|chr2 (64846007-64846333)
               

               
               3-347, gnl|monDom2|scaffold_2 (60358743-60359364)
               

               
               3-347, gnl|oryCun1|scaffold_209716 (157240-156670)
               

               
               3-347, gnl|panTro1|chr13 (54575147-54575725)
               

               
               3-347, gnl|rheMac2|chr12 (28135419-28136007)
               

               
               3-347, gnl|rn3|chr3 (46730920-46731459)

	3-347, gnl\|bosTau2\|chr2 (24247632-24247984)
	3-347, gnl\|canFam2\|chr36 (12724152-12724719)
	3-347, gnl\|echTel1\|scaffold_293659 (123973-123395)
	3-347, gnl\|hg17\|chr2 (165177298-165177876)
	3-347, gnl\|Hg17\|chr2 (165177525-165177870)
	3-347, gnl\|loxAfr1\|scaffold_10780 (12647-13224)
	3-347, gnl\|mm7\|chr2 (64845800-64846339)
	3-347, gnl\|Mm7\|chr2 (64846007-64846333)
	3-347, gnl\|monDom2\|scaffold_2 (60358743-60359364)
	3-347, gnl\|oryCun1\|scaffold_209716 (157240-156670)
	3-347, gnl\|panTro1\|chr13 (54575147-54575725)
	3-347, gnl\|rheMac2\|chr12 (28135419-28136007)
	3-347, gnl\|rn3\|chr3 (46730920-46731459)