Non-Coding RNA Search

Ss1.1-OvF8-UMC-p8mm2-002-g10.3

Sequence:


               
               CTCACTCGCTTTACATATTGGGGCACTGAAGCCCAGGACCAGATGAGCCCAAGGGCATTC
ACAGCAGAGCTGGGACCAGAACTGGGGGACCCTTAACCTGAGAGGAGATGGACTCGTGGG
CGGCAGGGGTAAGGACTTCCACCCTCATCCCCTGCAAACACCCGGAGAACAAACCTGCAT
GGGCCTGGAAGTGTGAGGTTCCGCTCTGGACAGCTGGTTGCAATTACCAAGTGCAGGAGG
ACAGGCAGGCGAGGGGTGTCCTCTCTCCTGAGAGGGGCGAGGGACGGCAGGGGCCTGAAA
AAAGGCCCTGGAATGCAGGCCAGCTGGATGGCGGTTCTTTAAAGGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCACTCGCTTTACATATTGGGGCACTGAAGCCCAGGACCAGATGAGCCCAAGGGCATTC
ACAGCAGAGCTGGGACCAGAACTGGGGGACCCTTAACCTGAGAGGAGATGGACTCGTGGG
CGGCAGGGGTAAGGACTTCCACCCTCATCCCCTGCAAACACCCGGAGAACAAACCTGCAT
GGGCCTGGAAGTGTGAGGTTCCGCTCTGGACAGCTGGTTGCAATTACCAAGTGCAGGAGG
ACAGGCAGGCGAGGGGTGTCCTCTCTCCTGAGAGGGGCGAGGGACGGCAGGGGCCTGAAA
AAAGGCCCTGGAATGCAGGCCAGCTGGATGGCGGTTCTTTAAAGGTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               215-310, - strand, RNAz p=0.617744

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               215-310, - strand, RNAz p=0.617744

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               91-348, gnl|bosTau2|chr18 (17185454-17185210)
               

               
               91-348, gnl|canFam2|chr2 (69460861-69460239)
               

               
               91-348, gnl|hg17|chr16 (47122950-47123627)
               

               
               91-348, gnl|Hg17|chr16 (47123148-47123393)
               

               
               91-348, gnl|mm7|chr8 (85426598-85427236)
               

               
               91-348, gnl|Mm7|chr8 (85426750-85426990)
               

               
               91-348, gnl|oryCun1|scaffold_97617 (24089-23554)
               

               
               91-348, gnl|panTro1|chrUn_random (10946486-10947164)
               

               
               91-348, gnl|rheMac2|chr20 (46724648-46725328)
               

               
               91-348, gnl|rn3|chr19 (21621634-21620982)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-348, gnl|bosTau2|chr18 (17185454-17185210)
               

               
               91-348, gnl|canFam2|chr2 (69460861-69460239)
               

               
               91-348, gnl|hg17|chr16 (47122950-47123627)
               

               
               91-348, gnl|Hg17|chr16 (47123148-47123393)
               

               
               91-348, gnl|mm7|chr8 (85426598-85427236)
               

               
               91-348, gnl|Mm7|chr8 (85426750-85426990)
               

               
               91-348, gnl|oryCun1|scaffold_97617 (24089-23554)
               

               
               91-348, gnl|panTro1|chrUn_random (10946486-10947164)
               

               
               91-348, gnl|rheMac2|chr20 (46724648-46725328)
               

               
               91-348, gnl|rn3|chr19 (21621634-21620982)

	91-348, gnl\|bosTau2\|chr18 (17185454-17185210)
	91-348, gnl\|canFam2\|chr2 (69460861-69460239)
	91-348, gnl\|hg17\|chr16 (47122950-47123627)
	91-348, gnl\|Hg17\|chr16 (47123148-47123393)
	91-348, gnl\|mm7\|chr8 (85426598-85427236)
	91-348, gnl\|Mm7\|chr8 (85426750-85426990)
	91-348, gnl\|oryCun1\|scaffold_97617 (24089-23554)
	91-348, gnl\|panTro1\|chrUn_random (10946486-10947164)
	91-348, gnl\|rheMac2\|chr20 (46724648-46725328)
	91-348, gnl\|rn3\|chr19 (21621634-21620982)