Non-Coding RNA Search

Ss1.1-Ova1-OVR010002F04.5

Sequence:


               
               ATTGCCAGCCGCCAGTGGTCTGCACTTGGAGGGTCCTGCCACCAGTTCGAGGAGCACGTC
CACCACCTGACCATGGCCGAGGATCTGATTCTAGAGAGATGCGACCTGGAGCTGGAGGCC
AATGGCCGTGACCACCACACAGCTGACCTGTGCCGGGAGAGGCTGGTGGTCCGGCGGGGC
CAGGCCTTCCGGCTGACGCTGCACTTCGAGGGCCGAAACTACGAGCCCAGTGTGGACAGG
CTCACCTTCAGTGCCGTGACCGGCCCAGCCCCCAGCGAGGAGGCCGGGACCAAGGCCCGC
TTCAGGCTGTCTGATGCTGCGGAGGAAGGTGCCTGGAGAGCCGAGGTGGTGGACCAGCAG
GACAACACCCTCTCGCTGCAGCTCAGCACCCCGGCCAGCGCCCCCATCGGCCTGTACCGC
CTCAACCTGGAGGCCTCCACCGGCTACGAGGGCTCCAGCTTCCTTCTGGGTCACTTCACC
CTGCTCTTCAACGCTTGGTGCCCAGCGGACGACGTGTACCTGGACTCAGATGAGGAGCGG
CAGGAGTATGTCCTCACCCAGCAGGGCTTCGTCTACCAGGGCTCGGCCAAGTTCATCAAG
AGCATACCATGGAATTTTGGGCAGTTTGAAGACGGGATCCTGGACAGCTGCCTGATGCTC
CTGGACGTCAACCCCAAGTTCATGAGGGACGCCGGCCGTGACTGCTCCCGCCGAAGCAGC
CCGGTCTACGTGGGCCGGGTGGTGAGTGGCATGGTCAACTGCAATGATGACCAGGGTGTC
CTGCTGGGACGCTGGGACAACAACTACGGGGATGGCGTCAGCCCCATGTTCTGGATCGGC
AGCGTGGACATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGCCAGCCGCCAGTGGTCTGCACTTGGAGGGTCCTGCCACCAGTTCGAGGAGCACGTC
CACCACCTGACCATGGCCGAGGATCTGATTCTAGAGAGATGCGACCTGGAGCTGGAGGCC
AATGGCCGTGACCACCACACAGCTGACCTGTGCCGGGAGAGGCTGGTGGTCCGGCGGGGC
CAGGCCTTCCGGCTGACGCTGCACTTCGAGGGCCGAAACTACGAGCCCAGTGTGGACAGG
CTCACCTTCAGTGCCGTGACCGGCCCAGCCCCCAGCGAGGAGGCCGGGACCAAGGCCCGC
TTCAGGCTGTCTGATGCTGCGGAGGAAGGTGCCTGGAGAGCCGAGGTGGTGGACCAGCAG
GACAACACCCTCTCGCTGCAGCTCAGCACCCCGGCCAGCGCCCCCATCGGCCTGTACCGC
CTCAACCTGGAGGCCTCCACCGGCTACGAGGGCTCCAGCTTCCTTCTGGGTCACTTCACC
CTGCTCTTCAACGCTTGGTGCCCAGCGGACGACGTGTACCTGGACTCAGATGAGGAGCGG
CAGGAGTATGTCCTCACCCAGCAGGGCTTCGTCTACCAGGGCTCGGCCAAGTTCATCAAG
AGCATACCATGGAATTTTGGGCAGTTTGAAGACGGGATCCTGGACAGCTGCCTGATGCTC
CTGGACGTCAACCCCAAGTTCATGAGGGACGCCGGCCGTGACTGCTCCCGCCGAAGCAGC
CCGGTCTACGTGGGCCGGGTGGTGAGTGGCATGGTCAACTGCAATGATGACCAGGGTGTC
CTGCTGGGACGCTGGGACAACAACTACGGGGATGGCGTCAGCCCCATGTTCTGGATCGGC
AGCGTGGACATC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|6706797|emb|CAB66116.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6706797|emb|CAB66116.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               341-505, - strand, RNAz p=0.974794

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               341-505, - strand, RNAz p=0.974794

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               262-505, gnl|bosTau2|chr13 (48577951-48578194)
               

               
               262-505, gnl|Hg17|chr20 (36217906-36217663)
               

               
               262-505, gnl|Mm7|chr2 (157879840-157879597)
               


               
               622-755, gnl|bosTau2|chr13 (48584813-48584946)
               

               
               622-755, gnl|Hg17|chr20 (36209908-36209775)
               

               
               622-755, gnl|Mm7|chr2 (157873450-157873317)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               262-505, gnl|bosTau2|chr13 (48577951-48578194)
               

               
               262-505, gnl|Hg17|chr20 (36217906-36217663)
               

               
               262-505, gnl|Mm7|chr2 (157879840-157879597)
               


               
               622-755, gnl|bosTau2|chr13 (48584813-48584946)
               

               
               622-755, gnl|Hg17|chr20 (36209908-36209775)
               

               
               622-755, gnl|Mm7|chr2 (157873450-157873317)

	262-505, gnl\|bosTau2\|chr13 (48577951-48578194)
	262-505, gnl\|Hg17\|chr20 (36217906-36217663)
	262-505, gnl\|Mm7\|chr2 (157879840-157879597)

	622-755, gnl\|bosTau2\|chr13 (48584813-48584946)
	622-755, gnl\|Hg17\|chr20 (36209908-36209775)
	622-755, gnl\|Mm7\|chr2 (157873450-157873317)