Non-Coding RNA Search

Ss1.1-Ova1-OVR010003E08.5

Sequence:


               
               GTCGCGTCTCTCCTCCAGTGGGACCCCCATGCTGGCTGGGGTCTCCGAATACGAGCTTCC
TGAAGACCCTCGCTGGGAGCTGCCTCGGGACAGGCTGGTTTTAGGCAAACCCCTGGGAGA
GGGCTGCTTTGGGCAGGTGGTGTTGGCAGAGGCCATTGGGCTGGACAAGGACAAGCCCAA
CCGTGTGACCAAAGTGGCTGTGAAGATGCTGAAGTCGGATGCAACAGAGAAAGACCTGTC
AGACCTGATCTCTGAGATGGAGATGATGAAGATGATTGGGAAGCACAAGAACATCATCAA
CCTGCTGGGGGCCTGCACGCAGGACGGACCTCTATATGTCATTGTGGAGTATGCCTCCAA
GGGCAACCTCCGTGAGTACCTGCAGGCCCGGAGGCCACCTGGGCTGGAATACTGCTACAA
CCCCAGCCACAACCCGGAGGAGCAGCTCTCCTCCAAGGACCTGGTCTCCTGTGCCTATCA
GGTGGCTCGAGGCATGGAGTACCTCGCTTCCAAGAAGGTGTGGTGCCTGAATCCCCCCCG
CCCCAAGTGGAGGGGGACATCAGTCAGGAGAGCCAGTGGGGCCTCATGGCCACAGGGTCA
GGCTGGATTCAGTTCCCATCCACGTACTGCCACTTCCTGTGTAGCCTCAGGCAGCTAACT
TCTTACATTTTTTCAAATGTCAAGGCAGAATGATAACACCTATGTTGCATAGAGTGGTTG
TGGCGATAAAATGAGGTCCTGTGG------------------------------------
------------------------------------------------------------
------------GGCTTGGATCTTGTGTTGCTGTGGGGTAGGCTGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCGCGTCTCTCCTCCAGTGGGACCCCCATGCTGGCTGGGGTCTCCGAATACGAGCTTCC
TGAAGACCCTCGCTGGGAGCTGCCTCGGGACAGGCTGGTTTTAGGCAAACCCCTGGGAGA
GGGCTGCTTTGGGCAGGTGGTGTTGGCAGAGGCCATTGGGCTGGACAAGGACAAGCCCAA
CCGTGTGACCAAAGTGGCTGTGAAGATGCTGAAGTCGGATGCAACAGAGAAAGACCTGTC
AGACCTGATCTCTGAGATGGAGATGATGAAGATGATTGGGAAGCACAAGAACATCATCAA
CCTGCTGGGGGCCTGCACGCAGGACGGACCTCTATATGTCATTGTGGAGTATGCCTCCAA
GGGCAACCTCCGTGAGTACCTGCAGGCCCGGAGGCCACCTGGGCTGGAATACTGCTACAA
CCCCAGCCACAACCCGGAGGAGCAGCTCTCCTCCAAGGACCTGGTCTCCTGTGCCTATCA
GGTGGCTCGAGGCATGGAGTACCTCGCTTCCAAGAAGGTGTGGTGCCTGAATCCCCCCCG
CCCCAAGTGGAGGGGGACATCAGTCAGGAGAGCCAGTGGGGCCTCATGGCCACAGGGTCA
GGCTGGATTCAGTTCCCATCCACGTACTGCCACTTCCTGTGTAGCCTCAGGCAGCTAACT
TCTTACATTTTTTCAAATGTCAAGGCAGAATGATAACACCTATGTTGCATAGAGTGGTTG
TGGCGATAAAATGAGGTCCTGTGG------------------------------------
------------------------------------------------------------
------------GGCTTGGATCTTGTGTTGCTGTGGGGTAGGCTGGTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               326-484, - strand, RNAz p=0.874297

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               326-484, - strand, RNAz p=0.874297

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               326-539, gnl|bosTau2|chr27 (21778695-21778482)
               

               
               326-539, gnl|Hg17|chr8 (38392736-38392523)
               

               
               326-539, gnl|Mm7|chr8 (24327183-24327396)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               326-539, gnl|bosTau2|chr27 (21778695-21778482)
               

               
               326-539, gnl|Hg17|chr8 (38392736-38392523)
               

               
               326-539, gnl|Mm7|chr8 (24327183-24327396)

	326-539, gnl\|bosTau2\|chr27 (21778695-21778482)
	326-539, gnl\|Hg17\|chr8 (38392736-38392523)
	326-539, gnl\|Mm7\|chr8 (24327183-24327396)