Non-Coding RNA Search

Ss1.1-Ova1-OVR010007F11.5

Sequence:


               
               GGACTGCATATCCTGAAAGCCTCTTTCTCTGGTGAACGTCTGTTGTTTTCTCGCATTGGT
TTATTGGCTCCGTTTTTAATTTAACCAGATTGGACTCCTATCAGGTTCTTAAGGCAATGA
CTCAAAGCCGTCATTTGATGTCCGATTTAATATTTGGAGAGGAAATCCCAGTGGGGCCAT
CTCATCAAAAGGCACTGAAGCAGACAGAAGGGGGACGTTTCTATTGACAGCTAAGTGATC
TTTATTTTGGTATTAGGTGTTGTGTTTCCAAGGGGCACCCGCCGTTCGACCACGTTCTAA
AAGGATGTTGGGTTGTCCTTCCTCCTCCGCCGTGGCCCCCGCCACCGTGAGTGCTCAGAG
GTCTGCGGGCCACATGCCCCTTTGTTTGGGTGACTGGGGGAGTAAGGATGAGACGCTAGA
GTCACTGGCCCGCCTTCATCTTACGCCAGAGGGACTTGCCTTTCGTGTCAGTGTTGCTGA
CTGCTGGCTGGTTGGCCATGAAACAAATACAAGTGAGGGAATATTTTAGGGGCAATGTCT
TTATACTATGCTCAGGGCTCTCCAACCGGATTAGACACCAGAAACGCCAGGAGTGCTTTT
TCACATGCAGATCTGCCTCCCCCCCCCCCACCCCCCATGGGAGGTCCAGGGTCGAGCGTG
GGTGGAGCCCTGCTGGGTCTGAGGCCAGAGGCCCACCTGCCACGCTCTGTGGAATGAGGC
GTGTGTGAGCGAGATACCGCACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACTGCATATCCTGAAAGCCTCTTTCTCTGGTGAACGTCTGTTGTTTTCTCGCATTGGT
TTATTGGCTCCGTTTTTAATTTAACCAGATTGGACTCCTATCAGGTTCTTAAGGCAATGA
CTCAAAGCCGTCATTTGATGTCCGATTTAATATTTGGAGAGGAAATCCCAGTGGGGCCAT
CTCATCAAAAGGCACTGAAGCAGACAGAAGGGGGACGTTTCTATTGACAGCTAAGTGATC
TTTATTTTGGTATTAGGTGTTGTGTTTCCAAGGGGCACCCGCCGTTCGACCACGTTCTAA
AAGGATGTTGGGTTGTCCTTCCTCCTCCGCCGTGGCCCCCGCCACCGTGAGTGCTCAGAG
GTCTGCGGGCCACATGCCCCTTTGTTTGGGTGACTGGGGGAGTAAGGATGAGACGCTAGA
GTCACTGGCCCGCCTTCATCTTACGCCAGAGGGACTTGCCTTTCGTGTCAGTGTTGCTGA
CTGCTGGCTGGTTGGCCATGAAACAAATACAAGTGAGGGAATATTTTAGGGGCAATGTCT
TTATACTATGCTCAGGGCTCTCCAACCGGATTAGACACCAGAAACGCCAGGAGTGCTTTT
TCACATGCAGATCTGCCTCCCCCCCCCCCACCCCCCATGGGAGGTCCAGGGTCGAGCGTG
GGTGGAGCCCTGCTGGGTCTGAGGCCAGAGGCCCACCTGCCACGCTCTGTGGAATGAGGC
GTGTGTGAGCGAGATACCGCACCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               616-723, - strand, RNAz p=0.910801

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               616-723, - strand, RNAz p=0.910801

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-737, gnl|bosTau2|chr6 (58300479-58299715)
               

               
               2-737, gnl|Hg17|chr4 (88291260-88292277)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-737, gnl|bosTau2|chr6 (58300479-58299715)
               

               
               2-737, gnl|Hg17|chr4 (88291260-88292277)

	2-737, gnl\|bosTau2\|chr6 (58300479-58299715)
	2-737, gnl\|Hg17\|chr4 (88291260-88292277)