Ss1.1-Ova1-OVR010009D11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCTGGCCGCGGGCCTGTGCGCCCCGCAAGCGGGCGGCTGCGGCTGGTAGGGCGGCCCGG GCCCGTGCCGCGGCCGCGTGGAGGTGCTGTACGCCGGGGGCTGGGGCACCGTGTGCGACG ATGACTGGGACTTCGCGGACGCGCGCGTGGCCTGCCGAGAGGCAGGCTGCGGGCCGGCCC TGGGTGCCACGGGCCTCGGCCACTTCGGCTACGGCCGCGGCCCGGTGCTGCTGGACAACG TGGGTTGCGCCGGCACCGAAGCCCGCCTAAGCGACTGCTTCCACCTGGGCTGGGGCCAGC ACAACTGTGGCCACCACGAGGATGCTGGCGCGCTCTGCTCAGGGCATCTACGTCTGGCCA ACGGAGCCCATCGATGCGAGGGGCGTGTAGAGCTCTTCCTAGGACAGCGCTGGGGCACTG TTTGCGATGACGCTTGGGACCTGCGGGCAGCCGGTGTCCTATGTCGCCAGCTGGGCTGCG GCCGGGCCCTGGCAGCCCCTGGTGAGGCCCACTTCGGCCCAGGACGAGGCCCTATCCTCC TGGACAATGTCAAGTGCCGTGGGGACGAGAGTGCCTTGCTGCTCTGCTCACACATCCGCT GGGATGCTCACAACTGTGACCACAGCGAGGATGCCAGTGTCTTGTGCCAGCCGGCATGAC TCAGCCCGTTTGTTCTGCAGACCACCTCCTCTGGGAGCCTCCTGTGACCTGCCCCTCTTC TTCCAGGAAGTCCTCCTGTGATAACTGCAGTTCACTCTGTTCCTCTCTCCCCTTGTCTGG GAGAGAGCCTGTCCAGTTGGTGTGGTCCTTCCTGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCTGGCCGCGGGCCTGTGCGCCCCGCAAGCGGGCGGCTGCGGCTGGTAGGGCGGCCCGG GCCCGTGCCGCGGCCGCGTGGAGGTGCTGTACGCCGGGGGCTGGGGCACCGTGTGCGACG ATGACTGGGACTTCGCGGACGCGCGCGTGGCCTGCCGAGAGGCAGGCTGCGGGCCGGCCC TGGGTGCCACGGGCCTCGGCCACTTCGGCTACGGCCGCGGCCCGGTGCTGCTGGACAACG TGGGTTGCGCCGGCACCGAAGCCCGCCTAAGCGACTGCTTCCACCTGGGCTGGGGCCAGC ACAACTGTGGCCACCACGAGGATGCTGGCGCGCTCTGCTCAGGGCATCTACGTCTGGCCA ACGGAGCCCATCGATGCGAGGGGCGTGTAGAGCTCTTCCTAGGACAGCGCTGGGGCACTG TTTGCGATGACGCTTGGGACCTGCGGGCAGCCGGTGTCCTATGTCGCCAGCTGGGCTGCG GCCGGGCCCTGGCAGCCCCTGGTGAGGCCCACTTCGGCCCAGGACGAGGCCCTATCCTCC TGGACAATGTCAAGTGCCGTGGGGACGAGAGTGCCTTGCTGCTCTGCTCACACATCCGCT GGGATGCTCACAACTGTGACCACAGCGAGGATGCCAGTGTCTTGTGCCAGCCGGCATGAC TCAGCCCGTTTGTTCTGCAGACCACCTCCTCTGGGAGCCTCCTGTGACCTGCCCCTCTTC TTCCAGGAAGTCCTCCTGTGATAACTGCAGTTCACTCTGTTCCTCTCTCCCCTTGTCTGG GAGAGAGCCTGTCCAGTTGGTGTGGTCCTTCCTGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 420-539, - strand, RNAz p=0.737265 | |
| 420-538, - strand, RNAz p=0.887429 | |
| 700-813, - strand, RNAz p=0.792799 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 420-539, - strand, RNAz p=0.737265 | |
| 420-538, - strand, RNAz p=0.887429 | |
| 700-813, - strand, RNAz p=0.792799 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 42-330, gnl|bosTau2|chr25 (31269805-31269519) | |
| 42-330, gnl|canFam2|chr6 (10562570-10562881) | |
| 42-330, gnl|danRer3|chr16 (6012752-6012441) | |
| 42-330, gnl|dasNov1|scaffold_44333 (3227-3538) | |
| 42-330, gnl|echTel1|scaffold_207555 (2763-3074) | |
| 42-330, gnl|fr1|chrUn (227820392-227820085) | |
| 42-330, gnl|galGal2|chr5 (14178179-14177868) | |
| 42-330, gnl|hg17|chr7 (75674250-75674561) | |
| 42-330, gnl|Hg17|chr7 (75674553-75674267) | |
| 42-330, gnl|loxAfr1|scaffold_7176 (62389-62700) | |
| 42-330, gnl|mm7|chr5 (134939014-134939325) | |
| 42-330, gnl|Mm7|chr5 (134939317-134939031) | |
| 42-330, gnl|monDom2|scaffold_77 (4752727-4752416) | |
| 42-330, gnl|oryCun1|scaffold_155068 (1273-962) | |
| 42-330, gnl|panTro1|chr6 (76774964-76775275) | |
| 42-330, gnl|rheMac2|chr3 (49973664-49973353) | |
| 42-330, gnl|rn3|chr12 (21812692-21812381) | |
| 42-330, gnl|tetNig1|chr7 (1869471-1869162) | |
| 42-330, gnl|xenTro1|scaffold_38 (238360-238050) | |
| 340-816, gnl|bosTau2|chr25 (31262325-31261851) | |
| 340-816, gnl|canFam2|chr6 (10556365-10556707) | |
| 340-816, gnl|danRer3|chr16 (6035063-6034727) | |
| 340-816, gnl|dasNov1|scaffold_5072 (90218-89925) | |
| 340-816, gnl|echTel1|scaffold_211351 (47-393) | |
| 340-816, gnl|fr1|chrUn (227824877-227824569) | |
| 340-816, gnl|galGal2|chr19 (3963531-3963200) | |
| 340-816, gnl|hg17|chr7 (75664007-75664349) | |
| 340-816, gnl|Hg17|chr7 (75664346-75663874) | |
| 340-816, gnl|loxAfr1|scaffold_121213 (4523-4215) | |
| 340-816, gnl|mm7|chr5 (134932152-134932495) | |
| 340-816, gnl|Mm7|chr5 (134932491-134932029) | |
| 340-816, gnl|monDom2|scaffold_77 (4763493-4763149) | |
| 340-816, gnl|oryCun1|scaffold_155068 (6303-5960) | |
| 340-816, gnl|panTro1|chr6 (76764712-76765054) | |
| 340-816, gnl|rheMac2|chr3 (49984514-49984205) | |
| 340-816, gnl|rn3|chr12 (21820222-21819879) | |
| 340-816, gnl|tetNig1|chr7 (1873470-1873162) | |
| 340-816, gnl|xenTro1|scaffold_38 (250739-250419) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 42-330, gnl|bosTau2|chr25 (31269805-31269519) | |
| 42-330, gnl|canFam2|chr6 (10562570-10562881) | |
| 42-330, gnl|danRer3|chr16 (6012752-6012441) | |
| 42-330, gnl|dasNov1|scaffold_44333 (3227-3538) | |
| 42-330, gnl|echTel1|scaffold_207555 (2763-3074) | |
| 42-330, gnl|fr1|chrUn (227820392-227820085) | |
| 42-330, gnl|galGal2|chr5 (14178179-14177868) | |
| 42-330, gnl|hg17|chr7 (75674250-75674561) | |
| 42-330, gnl|Hg17|chr7 (75674553-75674267) | |
| 42-330, gnl|loxAfr1|scaffold_7176 (62389-62700) | |
| 42-330, gnl|mm7|chr5 (134939014-134939325) | |
| 42-330, gnl|Mm7|chr5 (134939317-134939031) | |
| 42-330, gnl|monDom2|scaffold_77 (4752727-4752416) | |
| 42-330, gnl|oryCun1|scaffold_155068 (1273-962) | |
| 42-330, gnl|panTro1|chr6 (76774964-76775275) | |
| 42-330, gnl|rheMac2|chr3 (49973664-49973353) | |
| 42-330, gnl|rn3|chr12 (21812692-21812381) | |
| 42-330, gnl|tetNig1|chr7 (1869471-1869162) | |
| 42-330, gnl|xenTro1|scaffold_38 (238360-238050) | |
| 340-816, gnl|bosTau2|chr25 (31262325-31261851) | |
| 340-816, gnl|canFam2|chr6 (10556365-10556707) | |
| 340-816, gnl|danRer3|chr16 (6035063-6034727) | |
| 340-816, gnl|dasNov1|scaffold_5072 (90218-89925) | |
| 340-816, gnl|echTel1|scaffold_211351 (47-393) | |
| 340-816, gnl|fr1|chrUn (227824877-227824569) | |
| 340-816, gnl|galGal2|chr19 (3963531-3963200) | |
| 340-816, gnl|hg17|chr7 (75664007-75664349) | |
| 340-816, gnl|Hg17|chr7 (75664346-75663874) | |
| 340-816, gnl|loxAfr1|scaffold_121213 (4523-4215) | |
| 340-816, gnl|mm7|chr5 (134932152-134932495) | |
| 340-816, gnl|Mm7|chr5 (134932491-134932029) | |
| 340-816, gnl|monDom2|scaffold_77 (4763493-4763149) | |
| 340-816, gnl|oryCun1|scaffold_155068 (6303-5960) | |
| 340-816, gnl|panTro1|chr6 (76764712-76765054) | |
| 340-816, gnl|rheMac2|chr3 (49984514-49984205) | |
| 340-816, gnl|rn3|chr12 (21820222-21819879) | |
| 340-816, gnl|tetNig1|chr7 (1873470-1873162) | |
| 340-816, gnl|xenTro1|scaffold_38 (250739-250419) |