Non-Coding RNA Search

Ss1.1-Ova1-OVR010009H08.5

Sequence:


               
               TGTCGGCTAGGAAATAGGCGGCCGCAGGGTTGGTGGCTGTGGCCACGGCTACAGAGTACT
CTGGCCCGGGAACGTCGGGAGGTAACCTCTCCGTTGTTAACTGCGGCCCAAACTCCGGCA
CAGGCCCTGGTCCCGGCCCGGGCTCGTGGAGCCGCTCCCTCGACCGAGCGCTGGAGAGAG
AGCGGCGGTAACCGGGGTGCTGAGCCTGAGCGGCCGGAAACTGAGGGAGTTTCCCCGGGG
AGCGGCCAACCACGACCTGACGGACACCACCCGTGCGGATCTATCACGAAATCGCCTCTC
AGAAATTCCCATAGAAGCATGTCACTTCGTTTCTCTTGAGAGTCTCAATTTATACCAAAA
TTGTATTCGGTATATACCAGAGGCAATTCTAAACCTGCAAGCTCTAACGTTCTTAAATAT
TAGTCGGAACCAGCTGTCTACATTGCCAGTACACTTGTGTAATTTACCACTGAAAGTCTT
AATTGCTAGTAATAACAAATTGGTCTCACTTCCAGAAGAAATTGGACACCTCAGACATTT
AACAGAACTTGATGTGAGCTGCAATGAAATTCAAACAATACCTTCCCAAATTGGTAATTT
GGAGGCCTTGAGAGACCTTAATGTAAGAAGAAATCACTTAGTACGTTTGCCTGAAGAGTT
AGCAGAGTTGCCTTTGATACGGTTAGACTTTTCCTGCAATAAAATTACAACAATCCCTGT
TTGTTATCGGAATCTCAGGCACCTACAGATGATCACCCTAGATAACAACCCACTACAATC
CCCTCCTGCACAGATATGTATAAAAGGCAAAGTCCACATATTTAAATACCTGAACATACA
GGCTTGTATGATTGCTCCAGATCTGCCAGATTATGATAGGAGACCCATGGGTTTTGGCTC
CTGGTAAGTATGTTGTATTCTTTTATCCTGTTATATTCCATCTTGCAGAAGAATCAATAA
ACTGGACCCTTAAATCTGCCTGACTGTTTGACCAAAGGGAAATAATGTATTTTGACACTA
TTTTTCTCAGAATGCTTATGTTAAGTAAAAAGTGATGACATAGATGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCGGCTAGGAAATAGGCGGCCGCAGGGTTGGTGGCTGTGGCCACGGCTACAGAGTACT
CTGGCCCGGGAACGTCGGGAGGTAACCTCTCCGTTGTTAACTGCGGCCCAAACTCCGGCA
CAGGCCCTGGTCCCGGCCCGGGCTCGTGGAGCCGCTCCCTCGACCGAGCGCTGGAGAGAG
AGCGGCGGTAACCGGGGTGCTGAGCCTGAGCGGCCGGAAACTGAGGGAGTTTCCCCGGGG
AGCGGCCAACCACGACCTGACGGACACCACCCGTGCGGATCTATCACGAAATCGCCTCTC
AGAAATTCCCATAGAAGCATGTCACTTCGTTTCTCTTGAGAGTCTCAATTTATACCAAAA
TTGTATTCGGTATATACCAGAGGCAATTCTAAACCTGCAAGCTCTAACGTTCTTAAATAT
TAGTCGGAACCAGCTGTCTACATTGCCAGTACACTTGTGTAATTTACCACTGAAAGTCTT
AATTGCTAGTAATAACAAATTGGTCTCACTTCCAGAAGAAATTGGACACCTCAGACATTT
AACAGAACTTGATGTGAGCTGCAATGAAATTCAAACAATACCTTCCCAAATTGGTAATTT
GGAGGCCTTGAGAGACCTTAATGTAAGAAGAAATCACTTAGTACGTTTGCCTGAAGAGTT
AGCAGAGTTGCCTTTGATACGGTTAGACTTTTCCTGCAATAAAATTACAACAATCCCTGT
TTGTTATCGGAATCTCAGGCACCTACAGATGATCACCCTAGATAACAACCCACTACAATC
CCCTCCTGCACAGATATGTATAAAAGGCAAAGTCCACATATTTAAATACCTGAACATACA
GGCTTGTATGATTGCTCCAGATCTGCCAGATTATGATAGGAGACCCATGGGTTTTGGCTC
CTGGTAAGTATGTTGTATTCTTTTATCCTGTTATATTCCATCTTGCAGAAGAATCAATAA
ACTGGACCCTTAAATCTGCCTGACTGTTTGACCAAAGGGAAATAATGTATTTTGACACTA
TTTTTCTCAGAATGCTTATGTTAAGTAAAAAGTGATGACATAGATGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26345458|dbj|BAC36380.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26345458|dbj|BAC36380.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-159, + strand, RNAz p=0.819458

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, + strand, RNAz p=0.819458

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_032773, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_032773, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-278, gnl|bosTau2|chr1 (42566012-42566286)
               

               
               1-278, gnl|Hg17|chr3 (199006447-199006721)
               

               
               1-278, gnl|Mm7|chr16 (32588653-32588927)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-278, gnl|bosTau2|chr1 (42566012-42566286)
               

               
               1-278, gnl|Hg17|chr3 (199006447-199006721)
               

               
               1-278, gnl|Mm7|chr16 (32588653-32588927)

	1-278, gnl\|bosTau2\|chr1 (42566012-42566286)
	1-278, gnl\|Hg17\|chr3 (199006447-199006721)
	1-278, gnl\|Mm7\|chr16 (32588653-32588927)