Non-Coding RNA Search

Ss1.1-Ova1-OVR010010F04.5

Sequence:


               
               CGGTTAAAACCATGGAGTATTGAGAGAGTGTTAATAGTCTCAAAATCCTTAACTAATTTT
GCAGATTTGTTTTACTCTGTTCTGATTCGGAAAGTTGGTTTCCCAGTAACCATGAACATG
TTTAAAGCTCTGTAGGATAAGAAGTGGTGAGTGTTTCTAGTTTCAGAAGTTGAAATTGAG
GCTGCTTAAAAATGATAGGTTGGTATCAACATAGATGTAGAAGTTTTACTTCTACATGTA
AATGTAAATACAAATTATAGTGACTCCATGGGACCCTGAAGCAGGAGACTAGGAGGTGGA
GTTGTTGGCTAAAGCATACTGATTCATTTGTGTCAGATGAGCTAAATTTGAGAAGATGAA
AGAACGCTGACTTTTCTGTTATTTTGTTAACTTTATATTTTAGTACTTAATAATTGAAGG
ACCATTTTCAATCCATTACTTCATTTGGTCTTCTAAGAAATAAATTTGTATCTCAATAAA
AAACCAAAAATAAAACAAGCAAAATAAAACCTCTAAATTTTAGAGGTTAGCGACAGAGTT
TAAGTGACCTCTTCAAATTCACATAGCTGGTTGGTGGCAGAGTGGGACAGACTCCAGTTG
TGATTCTTGGTGAAGTGTTCTTTTTGCACCATCATCTTGAACTCTGGTATCTTTAGGAAC
TGTGAGCCAGTGCCACTTTATATGAAGGAGCGCATGCTTCTGGGTTTTGTATTGCATTTG
GAGCCGAGACCAAGACTTTAAAGAACGCGTATTGTCCCACTTCCCTGCAAGCTATTAGTC
TGGCATTTGATTGCAGAAATGGATTGTTGTTTTGTTACTTTAAACGGGGTGAAGGTCATT
GGAGAAAGAGTACAGCTCACAGGAGGGATATAACTTTAAAGGGTTTGTTCCTCCTTTGTG
ATGATATTTCACAGTGCTTCCAGTTACATTTCTCATCTCATCCTTATA------------
------------------------------------------------------------
------------AATGGGCAGACTCTGGTCTTCTGCCTCCTAGTACCACACTTTCTCTGT
GACGCAATCTCACAGACATTTGTTTAAAATGACTACTGGTTACAGATGCTGTGGTGATTT
CTGGAGAAATATCATCACCTCCTCTATTTTCAGTCAGCCATCGCTCCCAGCCCCAACAGC
CCTCCCAGCCCCAGCGAACCCTGCTCCAGCATGTGGCTCAGTCACAGACCGCAACACAGA
CGTCCGTGGTGGTGAAGTCCATCCCAGCGTCTTCCCCCGGAGCAATCACCCACATTATGC
AGCAGGCATTAAGCAGTCACACTGCTTTTACCAAACACAGCGAGGAACTTGGAACTGAGG
AGGGCGAGGTTGAAGAGATGGACACTTTAGACCCTCAGACAGGTCTGTTTTATCGATCTG
CCCTGACTCAGTCACAGTCAGCTAAACAGCAGAAGCTTAGCCAGCCACAGCTGGAACAGA
CTCAGCTACAAGTGAAAACTCTGCAGTGCTTCCAGACTAAACAGAAGCAGACCATCCACC
TGCAGGCAGACCAGCTCCAGCACAAACTCCCGCAAATGCCCCAGCTTTCCATCAGGCATC
AAAAACTCACCCCTCTCCAGCAAGAACAAGCACAGCCCAAGCCAGATGTACAGCACACAC
AGCATCCCGTGGTGGCCAAAGACAGGCAGCTTCCTACCTTAATGGCACAGCCCCCACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTTAAAACCATGGAGTATTGAGAGAGTGTTAATAGTCTCAAAATCCTTAACTAATTTT
GCAGATTTGTTTTACTCTGTTCTGATTCGGAAAGTTGGTTTCCCAGTAACCATGAACATG
TTTAAAGCTCTGTAGGATAAGAAGTGGTGAGTGTTTCTAGTTTCAGAAGTTGAAATTGAG
GCTGCTTAAAAATGATAGGTTGGTATCAACATAGATGTAGAAGTTTTACTTCTACATGTA
AATGTAAATACAAATTATAGTGACTCCATGGGACCCTGAAGCAGGAGACTAGGAGGTGGA
GTTGTTGGCTAAAGCATACTGATTCATTTGTGTCAGATGAGCTAAATTTGAGAAGATGAA
AGAACGCTGACTTTTCTGTTATTTTGTTAACTTTATATTTTAGTACTTAATAATTGAAGG
ACCATTTTCAATCCATTACTTCATTTGGTCTTCTAAGAAATAAATTTGTATCTCAATAAA
AAACCAAAAATAAAACAAGCAAAATAAAACCTCTAAATTTTAGAGGTTAGCGACAGAGTT
TAAGTGACCTCTTCAAATTCACATAGCTGGTTGGTGGCAGAGTGGGACAGACTCCAGTTG
TGATTCTTGGTGAAGTGTTCTTTTTGCACCATCATCTTGAACTCTGGTATCTTTAGGAAC
TGTGAGCCAGTGCCACTTTATATGAAGGAGCGCATGCTTCTGGGTTTTGTATTGCATTTG
GAGCCGAGACCAAGACTTTAAAGAACGCGTATTGTCCCACTTCCCTGCAAGCTATTAGTC
TGGCATTTGATTGCAGAAATGGATTGTTGTTTTGTTACTTTAAACGGGGTGAAGGTCATT
GGAGAAAGAGTACAGCTCACAGGAGGGATATAACTTTAAAGGGTTTGTTCCTCCTTTGTG
ATGATATTTCACAGTGCTTCCAGTTACATTTCTCATCTCATCCTTATA------------
------------------------------------------------------------
------------AATGGGCAGACTCTGGTCTTCTGCCTCCTAGTACCACACTTTCTCTGT
GACGCAATCTCACAGACATTTGTTTAAAATGACTACTGGTTACAGATGCTGTGGTGATTT
CTGGAGAAATATCATCACCTCCTCTATTTTCAGTCAGCCATCGCTCCCAGCCCCAACAGC
CCTCCCAGCCCCAGCGAACCCTGCTCCAGCATGTGGCTCAGTCACAGACCGCAACACAGA
CGTCCGTGGTGGTGAAGTCCATCCCAGCGTCTTCCCCCGGAGCAATCACCCACATTATGC
AGCAGGCATTAAGCAGTCACACTGCTTTTACCAAACACAGCGAGGAACTTGGAACTGAGG
AGGGCGAGGTTGAAGAGATGGACACTTTAGACCCTCAGACAGGTCTGTTTTATCGATCTG
CCCTGACTCAGTCACAGTCAGCTAAACAGCAGAAGCTTAGCCAGCCACAGCTGGAACAGA
CTCAGCTACAAGTGAAAACTCTGCAGTGCTTCCAGACTAAACAGAAGCAGACCATCCACC
TGCAGGCAGACCAGCTCCAGCACAAACTCCCGCAAATGCCCCAGCTTTCCATCAGGCATC
AAAAACTCACCCCTCTCCAGCAAGAACAAGCACAGCCCAAGCCAGATGTACAGCACACAC
AGCATCCCGTGGTGGCCAAAGACAGGCAGCTTCCTACCTTAATGGCACAGCCCCCACAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33151158|gb|AAL65260.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33151158|gb|AAL65260.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1440-1599, - strand, RNAz p=0.981228

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1440-1599, - strand, RNAz p=0.981228

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               222-797, gnl|bosTau2|chr9 (7500587-7500001)
               


               
               1240-1654, gnl|bosTau2|chr9 (7497027-7496613)
               

               
               1240-1654, gnl|Hg17|chr11 (75932949-75933363)
               

               
               1240-1654, gnl|Mm7|chr7 (94627216-94626802)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               222-797, gnl|bosTau2|chr9 (7500587-7500001)
               


               
               1240-1654, gnl|bosTau2|chr9 (7497027-7496613)
               

               
               1240-1654, gnl|Hg17|chr11 (75932949-75933363)
               

               
               1240-1654, gnl|Mm7|chr7 (94627216-94626802)

	222-797, gnl\|bosTau2\|chr9 (7500587-7500001)

	1240-1654, gnl\|bosTau2\|chr9 (7497027-7496613)
	1240-1654, gnl\|Hg17\|chr11 (75932949-75933363)
	1240-1654, gnl\|Mm7\|chr7 (94627216-94626802)