Non-Coding RNA Search

Ss1.1-Ova1-OVR010012A03.5

Sequence:


               
               CTTCAGCGTTTGCGCCGGCGGCCGCCGCGTCTGGCTCGGCTCCCCCTTCCTCTGACCCCC
GGCCCGGCGGCGCCCGCCTCCTCCGCCGCCACTCCGCCTCTTCCCTCCCGCCGTTTCTTC
CTCCTCTCCCGTCTTCCTTCCTCCTTCCCCTCTTCGTCGTCGCCTCCGCCCAGGACCGCC
GGCCGGGGGACGAGCTCGGGGCAGCAGCCAGGAGTTTCCCTACCACATAACCTCTCAGAA
CTGAACCAAAACAACATTGTTCCTAGAGTGCTTATTTTTAAGGTAGAACTTTAGACTTCA
TAGCACTGAATTAACCTGCACTGAAAGCTGTTTACCTGCAGTTGTTCACTTTTTTGAAAG
TGACCATGTCTCAAGTTCAAGTGCAAGTTCAGAACCCATCTGCTGCTCTCTCAGGGAGCC
AAATACTGAACATCTTGAGGTTTAATTAGAAAGTAAATACGGGGAAAATTATTGGCAAGA
ATATAAAACCTTGTAGCCAGCACTGCCATATACTTTAAGTGTTAGAGACATGAAAATTGA
CCACTGAAGTGTCGTTAAACATAACTCAGTCAGTAGCATTTTGGTCATAGAAACTTTTGT
AGTTTACCTTTGATGTCTCAGATTGTTTATGTCAAACTTGGTTTTCAAAATTGGAAATAA
TTCAGCATTGTTTTCTGTTGTGAACGAAAACAAGTTCCATTTACCACTGACTGCATGTGA
TCATCTCAACCAAAAAAGTTTTACCCTAAGAGGGTATAAGATTTTTACAGTCCTTCGTCA
GGGAACTGCAAAACACTCTGCAAACACTGACATACTTTGTGTTTTTTTTAGCTGGGAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCAGCGTTTGCGCCGGCGGCCGCCGCGTCTGGCTCGGCTCCCCCTTCCTCTGACCCCC
GGCCCGGCGGCGCCCGCCTCCTCCGCCGCCACTCCGCCTCTTCCCTCCCGCCGTTTCTTC
CTCCTCTCCCGTCTTCCTTCCTCCTTCCCCTCTTCGTCGTCGCCTCCGCCCAGGACCGCC
GGCCGGGGGACGAGCTCGGGGCAGCAGCCAGGAGTTTCCCTACCACATAACCTCTCAGAA
CTGAACCAAAACAACATTGTTCCTAGAGTGCTTATTTTTAAGGTAGAACTTTAGACTTCA
TAGCACTGAATTAACCTGCACTGAAAGCTGTTTACCTGCAGTTGTTCACTTTTTTGAAAG
TGACCATGTCTCAAGTTCAAGTGCAAGTTCAGAACCCATCTGCTGCTCTCTCAGGGAGCC
AAATACTGAACATCTTGAGGTTTAATTAGAAAGTAAATACGGGGAAAATTATTGGCAAGA
ATATAAAACCTTGTAGCCAGCACTGCCATATACTTTAAGTGTTAGAGACATGAAAATTGA
CCACTGAAGTGTCGTTAAACATAACTCAGTCAGTAGCATTTTGGTCATAGAAACTTTTGT
AGTTTACCTTTGATGTCTCAGATTGTTTATGTCAAACTTGGTTTTCAAAATTGGAAATAA
TTCAGCATTGTTTTCTGTTGTGAACGAAAACAAGTTCCATTTACCACTGACTGCATGTGA
TCATCTCAACCAAAAAAGTTTTACCCTAAGAGGGTATAAGATTTTTACAGTCCTTCGTCA
GGGAACTGCAAAACACTCTGCAAACACTGACATACTTTGTGTTTTTTTTAGCTGGGAACA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               316-432, + strand, RNAz p=0.691228
               

               
               332-432, - strand, RNAz p=0.650072

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               316-432, + strand, RNAz p=0.691228
               

               
               332-432, - strand, RNAz p=0.650072

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_017453, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_017453, +

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               277-432, gnl|bosTau2|chr13 (57582325-57582169)
               

               
               277-432, gnl|canFam2|chr24 (38826594-38826782)
               

               
               277-432, gnl|dasNov1|scaffold_191000 (326-154)
               

               
               277-432, gnl|echTel1|scaffold_309771 (10568-10756)
               

               
               277-432, gnl|galGal2|chr20 (6175270-6175094)
               

               
               277-432, gnl|hg17|chr20 (47216060-47216248)
               

               
               277-432, gnl|Hg17|chr20 (47216235-47216079)
               

               
               277-432, gnl|mm7|chr2 (166715131-166715316)
               

               
               277-432, gnl|Mm7|chr2 (166715303-166715150)
               

               
               277-432, gnl|monDom2|scaffold_1 (160464335-160464517)
               

               
               277-432, gnl|oryCun1|scaffold_174639 (2181-2369)
               

               
               277-432, gnl|panTro1|chr21 (49907111-49907299)
               

               
               277-432, gnl|rheMac2|chr10 (15328236-15328048)
               

               
               277-432, gnl|rn3|chr3 (158032514-158032681)
               

               
               277-432, gnl|xenTro1|scaffold_184 (860187-860368)
               


               
               484-821, gnl|bosTau2|chr13 (57590097-57589751)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               277-432, gnl|bosTau2|chr13 (57582325-57582169)
               

               
               277-432, gnl|canFam2|chr24 (38826594-38826782)
               

               
               277-432, gnl|dasNov1|scaffold_191000 (326-154)
               

               
               277-432, gnl|echTel1|scaffold_309771 (10568-10756)
               

               
               277-432, gnl|galGal2|chr20 (6175270-6175094)
               

               
               277-432, gnl|hg17|chr20 (47216060-47216248)
               

               
               277-432, gnl|Hg17|chr20 (47216235-47216079)
               

               
               277-432, gnl|mm7|chr2 (166715131-166715316)
               

               
               277-432, gnl|Mm7|chr2 (166715303-166715150)
               

               
               277-432, gnl|monDom2|scaffold_1 (160464335-160464517)
               

               
               277-432, gnl|oryCun1|scaffold_174639 (2181-2369)
               

               
               277-432, gnl|panTro1|chr21 (49907111-49907299)
               

               
               277-432, gnl|rheMac2|chr10 (15328236-15328048)
               

               
               277-432, gnl|rn3|chr3 (158032514-158032681)
               

               
               277-432, gnl|xenTro1|scaffold_184 (860187-860368)
               


               
               484-821, gnl|bosTau2|chr13 (57590097-57589751)

	316-432, + strand, RNAz p=0.691228
	332-432, - strand, RNAz p=0.650072

	277-432, gnl\|bosTau2\|chr13 (57582325-57582169)
	277-432, gnl\|canFam2\|chr24 (38826594-38826782)
	277-432, gnl\|dasNov1\|scaffold_191000 (326-154)
	277-432, gnl\|echTel1\|scaffold_309771 (10568-10756)
	277-432, gnl\|galGal2\|chr20 (6175270-6175094)
	277-432, gnl\|hg17\|chr20 (47216060-47216248)
	277-432, gnl\|Hg17\|chr20 (47216235-47216079)
	277-432, gnl\|mm7\|chr2 (166715131-166715316)
	277-432, gnl\|Mm7\|chr2 (166715303-166715150)
	277-432, gnl\|monDom2\|scaffold_1 (160464335-160464517)
	277-432, gnl\|oryCun1\|scaffold_174639 (2181-2369)
	277-432, gnl\|panTro1\|chr21 (49907111-49907299)
	277-432, gnl\|rheMac2\|chr10 (15328236-15328048)
	277-432, gnl\|rn3\|chr3 (158032514-158032681)
	277-432, gnl\|xenTro1\|scaffold_184 (860187-860368)

	484-821, gnl\|bosTau2\|chr13 (57590097-57589751)