Non-Coding RNA Search

Ss1.1-Ova1-OVR010012C03.5

Sequence:


               
               TCAGAGTCTATTGGTATTCATGCTTGGGGTTCTGTGGTCTGGATTTGAGATATAAATTTG
GGAGCAAACAATATATGAGTTGCACTTAAAGGCATA------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------AAGACAAAAAAAGACCAAAGAAAGAAAGAAAGAAAG
AGGTATAACTGGATGAGCTCAGCAAGGGGAGGTTATAGATGGAAAAGCACCCTTTCCTTG
GCTGCTGCTAAGGTCCTTCCGAAGAAGCTAAGGCCACGTTGGGATGAGCCCTCACTTCAT
CTGGCGACTAGCACCGAGCCTGGCAGACCCCACCTAGCATTCGTCCACACCGTGGCGTCC
GCACCGTGGCCTCCGTCTTGGAGCTCGCCGGCATCTATTATGCCCTTATCCTGCACGATG
ATGAGATCAATGCCCTCATTAAAGCAGCAGGTGTGAATGTTGAGCCATTCTGGCCAGGCT
TGTTTGCAAAGGCTCTGGCCAATGTCAACATCGGGAGCCTCATCTGCAATGTGGGGGCTG
AGGGACCTGCCCCAGCAGCTGGGGCTGCACCAGCAGGAGGTCCCACCCCAGCCACCACTG
CTGCCCCAGCTGAGGAGAAGGAAGTAGAAGTGAAGAAAGAAGAATCTGAGGAGTCTGATG
ATGATATGGGCTTTGGTCTTTTTTGACTAAACTTCTATAACCCCTTCAGTAATAAAAAGC
TGAGCTATTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGAGTCTATTGGTATTCATGCTTGGGGTTCTGTGGTCTGGATTTGAGATATAAATTTG
GGAGCAAACAATATATGAGTTGCACTTAAAGGCATA------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------AAGACAAAAAAAGACCAAAGAAAGAAAGAAAGAAAG
AGGTATAACTGGATGAGCTCAGCAAGGGGAGGTTATAGATGGAAAAGCACCCTTTCCTTG
GCTGCTGCTAAGGTCCTTCCGAAGAAGCTAAGGCCACGTTGGGATGAGCCCTCACTTCAT
CTGGCGACTAGCACCGAGCCTGGCAGACCCCACCTAGCATTCGTCCACACCGTGGCGTCC
GCACCGTGGCCTCCGTCTTGGAGCTCGCCGGCATCTATTATGCCCTTATCCTGCACGATG
ATGAGATCAATGCCCTCATTAAAGCAGCAGGTGTGAATGTTGAGCCATTCTGGCCAGGCT
TGTTTGCAAAGGCTCTGGCCAATGTCAACATCGGGAGCCTCATCTGCAATGTGGGGGCTG
AGGGACCTGCCCCAGCAGCTGGGGCTGCACCAGCAGGAGGTCCCACCCCAGCCACCACTG
CTGCCCCAGCTGAGGAGAAGGAAGTAGAAGTGAAGAAAGAAGAATCTGAGGAGTCTGATG
ATGATATGGGCTTTGGTCTTTTTTGACTAAACTTCTATAACCCCTTCAGTAATAAAAAGC
TGAGCTATTTGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q6V8L6_MACRA

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q6V8L6_MACRA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               399-514, - strand, RNAz p=0.77598

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               399-514, - strand, RNAz p=0.77598

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               198-684, gnl|bosTau2|chr24 (18701573-18702047)
               

               
               198-684, gnl|Hg17|chr2 (176891593-176891108)
               

               
               198-684, gnl|Mm7|chr8 (105172083-105171611)
               


               
               369-682, gnl|bosTau2|chr21 (30860955-30860661)
               

               
               369-682, gnl|Hg17|chr2 (176891415-176891106)
               

               
               369-682, gnl|Mm7|chr8 (105171923-105171610)
               


               
               383-681, gnl|bosTau2|chr13 (46155302-46155583)
               

               
               383-681, gnl|Hg17|chr2 (176891362-176891106)
               

               
               383-681, gnl|Mm7|chr7 (123382817-123382559)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               198-684, gnl|bosTau2|chr24 (18701573-18702047)
               

               
               198-684, gnl|Hg17|chr2 (176891593-176891108)
               

               
               198-684, gnl|Mm7|chr8 (105172083-105171611)
               


               
               369-682, gnl|bosTau2|chr21 (30860955-30860661)
               

               
               369-682, gnl|Hg17|chr2 (176891415-176891106)
               

               
               369-682, gnl|Mm7|chr8 (105171923-105171610)
               


               
               383-681, gnl|bosTau2|chr13 (46155302-46155583)
               

               
               383-681, gnl|Hg17|chr2 (176891362-176891106)
               

               
               383-681, gnl|Mm7|chr7 (123382817-123382559)

	198-684, gnl\|bosTau2\|chr24 (18701573-18702047)
	198-684, gnl\|Hg17\|chr2 (176891593-176891108)
	198-684, gnl\|Mm7\|chr8 (105172083-105171611)

	369-682, gnl\|bosTau2\|chr21 (30860955-30860661)
	369-682, gnl\|Hg17\|chr2 (176891415-176891106)
	369-682, gnl\|Mm7\|chr8 (105171923-105171610)

	383-681, gnl\|bosTau2\|chr13 (46155302-46155583)
	383-681, gnl\|Hg17\|chr2 (176891362-176891106)
	383-681, gnl\|Mm7\|chr7 (123382817-123382559)