Ss1.1-Ova1-OVR010013E12.5
|
ATATTCATATCTTCACTAAAGAGGATGTTTCATGTTATAACATTGACCCGAAAGAAAAGG
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------CAGCCCTAAAAC
AAAGAAAAACAAAAAGTTCAGAAAGTTGGTACATTACAAAATGTATTTTTGTTTCTGGTG
CTGATTTCCTATCAGACACCATCCTGAGTTGCCATTTGGACTAAATTTTGCTTTTCTCCT
CTCTGTGAGTGGCTTTCACATCTTCCTCGGAAAGGTGCCAAGCCCCCTCGCTTTCGCCAA
ACCCACCTGCCTGTCCCTCTGTGACCTATATCTCTTTCACAAAGCTTCATCAGAAAGTGT
AATGCATTCCTTTTCTAATTTTCATTTGTAAAAACAACATATGTTTATATTTTTAAGACC
AACATTCATAATAGCCATGCAGACACAATTTTTTAAAGGCTTTTCACAGTCCTCCCCAGT
CTTTTAAACACATGCGTGATATGTTTTCACAGTTACTGACATAAGGTTATGTCATTTTCC
CCTTGATCACCTAACTTTGATATTATAAACTTTTCATTTCAGATGAAAGTTTGAAATTGT
CATTTCAGATGCTGTGTAATTGCCCACCTTTTTATGTGCCATCCCTTTCTTAGTCAGGTC
CCTCTAGTTACATACTTTAGTTCTGTTTCCAGTCTCTGCTGTTATAAATCACGTCCCGGT
GCACATTTGTTCACTGGCACATGGTCTCTCCCTCTGTTCTGCAGGTCAGCATCAGTCCAG
AGCTCTGGCAGAGAGCATGCTCACCACAAGTGAGTTTTTGAAAGAAATTAGCTATGAGCT
CATCACAGGAAAGGTCAGTTTCCTGGCATCGCATTTCAAAACCACATCATTAGGTGAGTG
GCTCTCGGGTTCAGCAATACTGCCAGCCCCCAGCTGCCTGATTTTCTGAATTTAAATCTT
TACCCGTCAAGGAGCTGAGTGTGGAGCTTAAGCTTGCCCGCTGACCTTCCTTCTATGGTT
TCTTCTAAGCCTTTTGTTACTGACACAGCAAGGGGTTCAGGCACTAGGATGGGAGGCCTC
CACTCCACCACTACTTTGTTGTTTGACCTTGGGCGACACTGCCTCCCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATATTCATATCTTCACTAAAGAGGATGTTTCATGTTATAACATTGACCCGAAAGAAAAGG
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------CAGCCCTAAAAC
AAAGAAAAACAAAAAGTTCAGAAAGTTGGTACATTACAAAATGTATTTTTGTTTCTGGTG
CTGATTTCCTATCAGACACCATCCTGAGTTGCCATTTGGACTAAATTTTGCTTTTCTCCT
CTCTGTGAGTGGCTTTCACATCTTCCTCGGAAAGGTGCCAAGCCCCCTCGCTTTCGCCAA
ACCCACCTGCCTGTCCCTCTGTGACCTATATCTCTTTCACAAAGCTTCATCAGAAAGTGT
AATGCATTCCTTTTCTAATTTTCATTTGTAAAAACAACATATGTTTATATTTTTAAGACC
AACATTCATAATAGCCATGCAGACACAATTTTTTAAAGGCTTTTCACAGTCCTCCCCAGT
CTTTTAAACACATGCGTGATATGTTTTCACAGTTACTGACATAAGGTTATGTCATTTTCC
CCTTGATCACCTAACTTTGATATTATAAACTTTTCATTTCAGATGAAAGTTTGAAATTGT
CATTTCAGATGCTGTGTAATTGCCCACCTTTTTATGTGCCATCCCTTTCTTAGTCAGGTC
CCTCTAGTTACATACTTTAGTTCTGTTTCCAGTCTCTGCTGTTATAAATCACGTCCCGGT
GCACATTTGTTCACTGGCACATGGTCTCTCCCTCTGTTCTGCAGGTCAGCATCAGTCCAG
AGCTCTGGCAGAGAGCATGCTCACCACAAGTGAGTTTTTGAAAGAAATTAGCTATGAGCT
CATCACAGGAAAGGTCAGTTTCCTGGCATCGCATTTCAAAACCACATCATTAGGTGAGTG
GCTCTCGGGTTCAGCAATACTGCCAGCCCCCAGCTGCCTGATTTTCTGAATTTAAATCTT
TACCCGTCAAGGAGCTGAGTGTGGAGCTTAAGCTTGCCCGCTGACCTTCCTTCTATGGTT
TCTTCTAAGCCTTTTGTTACTGACACAGCAAGGGGTTCAGGCACTAGGATGGGAGGCCTC
CACTCCACCACTACTTTGTTGTTTGACCTTGGGCGACACTGCCTCCCT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
84-473, gnl|bosTau2|chr24 (25072898-25072505) |
|
84-473, gnl|canFam2|chr7 (69613346-69612980) |
|
84-473, gnl|dasNov1|scaffold_62173 (11386-11753) |
|
84-473, gnl|echTel1|scaffold_312282 (14159-14521) |
|
84-473, gnl|hg17|chr18 (17284209-17284599) |
|
84-473, gnl|Hg17|chr18 (17284226-17284622) |
|
84-473, gnl|loxAfr1|scaffold_6702 (32898-32480) |
|
84-473, gnl|mm7|chr18 (10716559-10716876) |
|
84-473, gnl|Mm7|chr18 (10716571-10716915) |
|
84-473, gnl|panTro1|chr17 (13184498-13184883) |
|
84-473, gnl|rheMac2|chr18 (14442804-14443193) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
84-473, gnl|bosTau2|chr24 (25072898-25072505) |
|
84-473, gnl|canFam2|chr7 (69613346-69612980) |
|
84-473, gnl|dasNov1|scaffold_62173 (11386-11753) |
|
84-473, gnl|echTel1|scaffold_312282 (14159-14521) |
|
84-473, gnl|hg17|chr18 (17284209-17284599) |
|
84-473, gnl|Hg17|chr18 (17284226-17284622) |
|
84-473, gnl|loxAfr1|scaffold_6702 (32898-32480) |
|
84-473, gnl|mm7|chr18 (10716559-10716876) |
|
84-473, gnl|Mm7|chr18 (10716571-10716915) |
|
84-473, gnl|panTro1|chr17 (13184498-13184883) |
|
84-473, gnl|rheMac2|chr18 (14442804-14443193) |
