Non-Coding RNA Search

Ss1.1-Ova1-OVR010013F05.5

Sequence:


               
               ATTGCAGCTCCCCAACAGTCCAGACCTGCCCACCCTTCAGGACCAGAGGTTCTCCTACCA
CCGGCTCAGACACTTGCTGGTCCTCATGTCCACCACGGGGCCCAGCGTGGGGCCTGCCAG
CGACTTGGGAGAGATCCACAACTGGACCGAACTGCTCCACTTCTTCAATCACACCCTGCC
TGAGTGCCACATGGAGCTCAGCGAGGACACCAAGCGAGTGGCCCTCTTCGTGCTCTACCT
GGCCATCTTCGTCGTCGGGCTGGTGGAGAACCTTCTGGTGATCTGCGTCAACTGGCACAG
CTCGGACCGCGCAGGCCTGCTGCGCCCCTACGTCCTCAACATGGCCATCGCAGACCTGGG
CATCGTCCTGTCTCTGCCCGTGTGGATGCTGGAGGTCACGCTGGACTACACCTGGCTCTG
GGGCAGCTTCTCCTGCCGCTTCACTCACTACTTCTATTTCGTCAACATGTACAGCAGTAT
CTTCTTCCTGGTGTGCCTCAGCATCGACCGCTACGTCACACTCACCAACGCCTTTCCAAC
CTGGCAGCGCCACCAGCACCGAGGACGACGGGCTGTGTGCATGGGGGTCTGGGTCCTCGC
AGCCCTCATCCCGCTGCCTGAGGTGGTCCACATCCAGCTGGTGGACAGCTTTGAGCCCAT
GTGCCTCTTCATGGCACCTTTTGAAACGTACAGCACGTGGGCCCTGGTGGCGGCCCTGTC
CACCACTGTCCTGGGCTTCCTGCTGCCCTTCCCTCTCATGGTGGTGTTCAACGTGCTGAC
CGCCTGCCGGCTGCGGCAGGCAGGACAGCCTGAGGGCCGGCGCCACTGCCGGCTGGTGTG
CGCCTACATAACTGTCTTTGTCATCTGCTGGCTGCCCTACCATGTGACCCTGCTGCTGAT
CACACTGCACGGGACCCACATCTCCCTCCACTGCTACCTGGCCCACCTGCTCTACTTCTT
CTACGACATCATCGACTGCTTCTCCATGCTCCACTGTGTTGTCAACCCCATCCTTTACAA
CTTTCTCAGCCCCAGCTTCCAGGGCCGGCTGCTCAATGCTGTGGTCCACTACCTTCCCAA
GGTCCAGGACAGGGAGGGCAGACATGCCTCCTCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGCAGCTCCCCAACAGTCCAGACCTGCCCACCCTTCAGGACCAGAGGTTCTCCTACCA
CCGGCTCAGACACTTGCTGGTCCTCATGTCCACCACGGGGCCCAGCGTGGGGCCTGCCAG
CGACTTGGGAGAGATCCACAACTGGACCGAACTGCTCCACTTCTTCAATCACACCCTGCC
TGAGTGCCACATGGAGCTCAGCGAGGACACCAAGCGAGTGGCCCTCTTCGTGCTCTACCT
GGCCATCTTCGTCGTCGGGCTGGTGGAGAACCTTCTGGTGATCTGCGTCAACTGGCACAG
CTCGGACCGCGCAGGCCTGCTGCGCCCCTACGTCCTCAACATGGCCATCGCAGACCTGGG
CATCGTCCTGTCTCTGCCCGTGTGGATGCTGGAGGTCACGCTGGACTACACCTGGCTCTG
GGGCAGCTTCTCCTGCCGCTTCACTCACTACTTCTATTTCGTCAACATGTACAGCAGTAT
CTTCTTCCTGGTGTGCCTCAGCATCGACCGCTACGTCACACTCACCAACGCCTTTCCAAC
CTGGCAGCGCCACCAGCACCGAGGACGACGGGCTGTGTGCATGGGGGTCTGGGTCCTCGC
AGCCCTCATCCCGCTGCCTGAGGTGGTCCACATCCAGCTGGTGGACAGCTTTGAGCCCAT
GTGCCTCTTCATGGCACCTTTTGAAACGTACAGCACGTGGGCCCTGGTGGCGGCCCTGTC
CACCACTGTCCTGGGCTTCCTGCTGCCCTTCCCTCTCATGGTGGTGTTCAACGTGCTGAC
CGCCTGCCGGCTGCGGCAGGCAGGACAGCCTGAGGGCCGGCGCCACTGCCGGCTGGTGTG
CGCCTACATAACTGTCTTTGTCATCTGCTGGCTGCCCTACCATGTGACCCTGCTGCTGAT
CACACTGCACGGGACCCACATCTCCCTCCACTGCTACCTGGCCCACCTGCTCTACTTCTT
CTACGACATCATCGACTGCTTCTCCATGCTCCACTGTGTTGTCAACCCCATCCTTTACAA
CTTTCTCAGCCCCAGCTTCCAGGGCCGGCTGCTCAATGCTGTGGTCCACTACCTTCCCAA
GGTCCAGGACAGGGAGGGCAGACATGCCTCCTCCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|30385616|gb|AAP23201.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|30385616|gb|AAP23201.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               626-825, - strand, RNAz p=0.985731

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               626-825, - strand, RNAz p=0.985731

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               68-1116, gnl|bosTau2|chr5 (32694513-32693462)
               

               
               68-1116, gnl|Hg17|chr12 (55675243-55676315)
               

               
               68-1116, gnl|Mm7|chr10 (127252486-127251426)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               68-1116, gnl|bosTau2|chr5 (32694513-32693462)
               

               
               68-1116, gnl|Hg17|chr12 (55675243-55676315)
               

               
               68-1116, gnl|Mm7|chr10 (127252486-127251426)

	68-1116, gnl\|bosTau2\|chr5 (32694513-32693462)
	68-1116, gnl\|Hg17\|chr12 (55675243-55676315)
	68-1116, gnl\|Mm7\|chr10 (127252486-127251426)