Non-Coding RNA Search

Ss1.1-Ova1-OVR010017C12.5

Sequence:


               
               CTTTCAGGATTGTGCCGAGACTCAAGAGGCCTGTAGAAGCCTCCAGAACTACAACCACGC
AGACCAAAGCCCACAGATTGCCACCGCTCTAGACGACTGCCAGCAGTCAGATCACAGTAG
CCCAGTGTCCTCTGTCCACTCCCATCCCGGCCAGTCAGTGCGTTCTGTCAGCAGTCCAAG
TGTCCCCGCCCTGGAAAACAGCTATGCCCAAATCAGCCCAGATCAAAGTGCCATCTCGGT
GCCATCTTTGCAGAACATGGAAACCAGTCCAATGATGGATGTCCCATCTGTTTCGGATCA
TTCTCAGCAAGTCGTCGACAGCGGATTTAGTGACCTGGGCAGTATCGAGAGCACAACCGA
GAACTACGAAAACCCGAGCAGCTATGATTCTACTATGGGTGGCAGCATTTGTGGAAACGG
CTCTTCCCAGAACAGCTGCTCCTATAGCAACCTCACCTCCAGCAATCTGACACAGAGCAG
CTGTGCTGTCACCCAGCAGATGTCCAACATCAGTGGGAGCTGCAGCATGCTGCAGCAGAC
CAGCATCAGCTCGCCCCCGACCTGCAGCGTCAAGTCTCCTCAGGGCTGCGTGGTGGAGAG
GCCCCCGAGCAGCAGCCAGCAGCTGGCCCAGTGCAGCATGGCCGCTAACTTCACGCCACC
CATGCAACTGGCTGAGATCCCCGAGACCGGCAACGCCAACCTTGGCTTATATGAACGAAT
GGGTCAGAGTGATTTTGGGGCTGGGCACTACCCACAGCCGTCAGCCACCTTCAGCCTTGC
CAAACTACAGCAGTTAACTAATACACTTATTGATCATTCATTGCCTTACAGCCATTCCGC
TGCTGTAACTTCCTATGCAAACAGCGCCTCTTTGTCCACACCATTAAGTAACACAGGGCT
TGTTCAGCTTTCTCAGTCTCCACACTCCGTCCCAGGGGGACCCCAAGCACAAGCGACCAT
GACCCCACCCCCCAATCTGACTCCTCCTCCGATGAATCTGCCACCGCCTCTTTTGCAACG
GAACATGGCTGCGTCAAATATTGGCATCTCCCACAGCCAAAGACTGGCAACCCAGATTGC
CCAGCAGGGGCACGTCTCCATGAGAACCAAATCGGCATCTCTGTCACCAGCCGCTGCCCA
CCATCAGTCACAAATCTATGGGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTCAGGATTGTGCCGAGACTCAAGAGGCCTGTAGAAGCCTCCAGAACTACAACCACGC
AGACCAAAGCCCACAGATTGCCACCGCTCTAGACGACTGCCAGCAGTCAGATCACAGTAG
CCCAGTGTCCTCTGTCCACTCCCATCCCGGCCAGTCAGTGCGTTCTGTCAGCAGTCCAAG
TGTCCCCGCCCTGGAAAACAGCTATGCCCAAATCAGCCCAGATCAAAGTGCCATCTCGGT
GCCATCTTTGCAGAACATGGAAACCAGTCCAATGATGGATGTCCCATCTGTTTCGGATCA
TTCTCAGCAAGTCGTCGACAGCGGATTTAGTGACCTGGGCAGTATCGAGAGCACAACCGA
GAACTACGAAAACCCGAGCAGCTATGATTCTACTATGGGTGGCAGCATTTGTGGAAACGG
CTCTTCCCAGAACAGCTGCTCCTATAGCAACCTCACCTCCAGCAATCTGACACAGAGCAG
CTGTGCTGTCACCCAGCAGATGTCCAACATCAGTGGGAGCTGCAGCATGCTGCAGCAGAC
CAGCATCAGCTCGCCCCCGACCTGCAGCGTCAAGTCTCCTCAGGGCTGCGTGGTGGAGAG
GCCCCCGAGCAGCAGCCAGCAGCTGGCCCAGTGCAGCATGGCCGCTAACTTCACGCCACC
CATGCAACTGGCTGAGATCCCCGAGACCGGCAACGCCAACCTTGGCTTATATGAACGAAT
GGGTCAGAGTGATTTTGGGGCTGGGCACTACCCACAGCCGTCAGCCACCTTCAGCCTTGC
CAAACTACAGCAGTTAACTAATACACTTATTGATCATTCATTGCCTTACAGCCATTCCGC
TGCTGTAACTTCCTATGCAAACAGCGCCTCTTTGTCCACACCATTAAGTAACACAGGGCT
TGTTCAGCTTTCTCAGTCTCCACACTCCGTCCCAGGGGGACCCCAAGCACAAGCGACCAT
GACCCCACCCCCCAATCTGACTCCTCCTCCGATGAATCTGCCACCGCCTCTTTTGCAACG
GAACATGGCTGCGTCAAATATTGGCATCTCCCACAGCCAAAGACTGGCAACCCAGATTGC
CCAGCAGGGGCACGTCTCCATGAGAACCAAATCGGCATCTCTGTCACCAGCCGCTGCCCA
CCATCAGTCACAAATCTATGGGCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61869850|ref|XP_602638.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61869850|ref|XP_602638.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               400-639, - strand, RNAz p=0.994016
               

               
               404-1164, - strand, RNAz p=0.917504

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               400-639, - strand, RNAz p=0.994016
               

               
               404-1164, - strand, RNAz p=0.917504

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1164, gnl|bosTau2|chr28 (24098737-24097574)
               

               
               1-1164, gnl|Hg17|chr10 (76459262-76460425)
               

               
               1-1164, gnl|Mm7|chr14 (19327998-19329161)
               


               
               5-659, gnl|bosTau2|chr27 (23301699-23301048)
               

               
               5-659, gnl|Hg17|chr8 (41910565-41909902)
               

               
               5-659, gnl|Mm7|chr8 (21724259-21724910)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1164, gnl|bosTau2|chr28 (24098737-24097574)
               

               
               1-1164, gnl|Hg17|chr10 (76459262-76460425)
               

               
               1-1164, gnl|Mm7|chr14 (19327998-19329161)
               


               
               5-659, gnl|bosTau2|chr27 (23301699-23301048)
               

               
               5-659, gnl|Hg17|chr8 (41910565-41909902)
               

               
               5-659, gnl|Mm7|chr8 (21724259-21724910)

	400-639, - strand, RNAz p=0.994016
	404-1164, - strand, RNAz p=0.917504

	1-1164, gnl\|bosTau2\|chr28 (24098737-24097574)
	1-1164, gnl\|Hg17\|chr10 (76459262-76460425)
	1-1164, gnl\|Mm7\|chr14 (19327998-19329161)

	5-659, gnl\|bosTau2\|chr27 (23301699-23301048)
	5-659, gnl\|Hg17\|chr8 (41910565-41909902)
	5-659, gnl\|Mm7\|chr8 (21724259-21724910)