Non-Coding RNA Search

Ss1.1-Ova1-OVR010017F03.5

Sequence:


               
               TGGCCTACTGGAGTGCTTCGGGGCCCAGGAGCCGTGGGAGGAGTCGCCGGCCTCACCGTG
GTAACCACAGCGCCGCTGCTGCCCCGCCTCGCAGGCCTCAGGACTGTCATCGCCTTTGGC
TGTGGGGTACTTTGGCCAGCGTCCCCGGAAATAGCCCCGCCGGCCTCTCAGACACCCCCA
TCCTCCCCGCGCCGCCGTCGCCGCCGCCATGCAGGGGGAGGACGCCAGATACCTCAAAAG
GAAGGTTAAAGGAGGAAATATTGATGTACATCCATCAGAAAAAGCACTCATTGTTCATTA
TGAAGTGGAAGCTACCATTCTTGGAGAAATGGGGGATCCCATGTTGGGAGAACGAAAGGA
ATGTCAAAAAATGTAAGTTTCCTTCATTTGTGCACATTTGAAAGTAGTGAACCTTATACA
GACTTTATGAAAATCTGATATCATTTAAATTTCCATAAATGATAAATGATTGTGGCATTC
TTCTAGACGTACATTATCTTAGTTAAGTAGGGACCATATTAAACTATAAATACAGAGTGT
ATTCCAGAGAATATCATGTTTATGTGAGCATAATTGGAACCTAATGAAAAATGCCTATTC
TTATTTATCCCATTTAGTAAATACATAAAACAGCATAGAAACCACTATAACTTGTGAAAT
CATTTATAAAAGATACATTTATGTGGGACTTTTTAGCTTAAGTTAGGAAGTTTGTATTTT
AAGGGATCCCATATTGTTTTTTCTTCCCTGGAATTGCATAAAGTGAAAGTGATGTGACTT
CCAAAATTTGCAAATGGGACGTTTATATTGAATTCATCCCTTAAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCCTACTGGAGTGCTTCGGGGCCCAGGAGCCGTGGGAGGAGTCGCCGGCCTCACCGTG
GTAACCACAGCGCCGCTGCTGCCCCGCCTCGCAGGCCTCAGGACTGTCATCGCCTTTGGC
TGTGGGGTACTTTGGCCAGCGTCCCCGGAAATAGCCCCGCCGGCCTCTCAGACACCCCCA
TCCTCCCCGCGCCGCCGTCGCCGCCGCCATGCAGGGGGAGGACGCCAGATACCTCAAAAG
GAAGGTTAAAGGAGGAAATATTGATGTACATCCATCAGAAAAAGCACTCATTGTTCATTA
TGAAGTGGAAGCTACCATTCTTGGAGAAATGGGGGATCCCATGTTGGGAGAACGAAAGGA
ATGTCAAAAAATGTAAGTTTCCTTCATTTGTGCACATTTGAAAGTAGTGAACCTTATACA
GACTTTATGAAAATCTGATATCATTTAAATTTCCATAAATGATAAATGATTGTGGCATTC
TTCTAGACGTACATTATCTTAGTTAAGTAGGGACCATATTAAACTATAAATACAGAGTGT
ATTCCAGAGAATATCATGTTTATGTGAGCATAATTGGAACCTAATGAAAAATGCCTATTC
TTATTTATCCCATTTAGTAAATACATAAAACAGCATAGAAACCACTATAACTTGTGAAAT
CATTTATAAAAGATACATTTATGTGGGACTTTTTAGCTTAAGTTAGGAAGTTTGTATTTT
AAGGGATCCCATATTGTTTTTTCTTCCCTGGAATTGCATAAAGTGAAAGTGATGTGACTT
CCAAAATTTGCAAATGGGACGTTTATATTGAATTCATCCCTTAAAAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26379543|dbj|BAB29081.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26379543|dbj|BAB29081.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               239-357, + strand, RNAz p=0.579542

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               239-357, + strand, RNAz p=0.579542

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               239-828, gnl|bosTau2|chr16 (25927590-25927021)
               

               
               239-828, gnl|Mm7|chr1 (163746313-163746816)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               239-828, gnl|bosTau2|chr16 (25927590-25927021)
               

               
               239-828, gnl|Mm7|chr1 (163746313-163746816)

	239-828, gnl\|bosTau2\|chr16 (25927590-25927021)
	239-828, gnl\|Mm7\|chr1 (163746313-163746816)