Non-Coding RNA Search

Ss1.1-Ova1-OVR010018F05.5

Sequence:


               
               CCTCTGCTGCCTATGGAAGTTCCCAGGCTAGGGGTCAAATCTGAGCTGCTGCTGAGGCCT
AGGTCACAGCCCTGGCAACACCAGATCCGAGCTGCATCTGCAACCTACACTGCAGCGCGC
AGCAGCTCTGGATCCTTAAGCCACCGAGTGAGGCCAGGAAGTGAACCCGAACCTGCACCC
TCACGGACACTGTGTGTCTGGTCCTTAACCCACTGAGCCACAAGGGGAGCTCCCTCTGGC
TTTTTTCAACTTCTCCTTGACTCTCGGGGTGGAGGGGGGGGCTGTCCTCAGGCCTCACCT
GTAGCAGCTCCAGCATGGGGCCCCGACTCCTCCGCTCCAGCTCTGCGATCAGCTCCTGCA
GGGCCTGGCTCTGCTGGGCCAGCCTGGCTTCTGTGGCCCCCAGGGCTTTCAGCTGTTCCC
GCTCCTCCTCCTCCACCTTCTGCAGCTGCCTCTGCTCCTCTTCTGCCAGGAAGTTTTTCT
GCCGGACAAACTCTTCGTGGATCCTCAGTTTGTGGGCCTCAACCTTCCCCTTCCAGGCTG
CTCTCTTCGTTGCAATATCCGCTTCCAGCTTCTCAGCCTGCTCCTGTTTATTTCTGAGTT
TCTCGAGTGCCACCTGGAGCTTCTCCTGGTACTCCTGAGCCGCCTCCTCAATGGGGACCA
TGGTGTGGTCCCGGTGTTTCTGGGACTGGGAACACACCCAGCAAAGGACCTTCCCATCGT
CCTTACAGAACAGGTGAAGCTTCTCTCCGTGCACCGCACACAGCTCCCACTGCGGGCCTT
CCTTGACCCCCTGGCTCATCTCTTTGAGGTTATCCACCATGTTGGCCACCTGCCGATTGG
GCCGGAGGTTCCTGAGCAGGAAGTGCTGCCGGCACACAGGACAGACGCTGCCCCCATCCT
TCCCAACCTCGGAGATGCATTCCTGGCAGAAGCTGTGGCCACATTCGATGCTCACGGGCT
CCACCATGGGATCCAGGCAGATGGAGCACGTGACCTCATCCCACATCCTTGCCAAGGGCA
GTGCTGAGGCCATGGTGCTGCCGGGCTATGAAGCAGCGCTGAGGAGATCTCGGGGTGGCC
TTTTCAAGGGACTCCGCAGATAATAGCTGGCTCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCTGCTGCCTATGGAAGTTCCCAGGCTAGGGGTCAAATCTGAGCTGCTGCTGAGGCCT
AGGTCACAGCCCTGGCAACACCAGATCCGAGCTGCATCTGCAACCTACACTGCAGCGCGC
AGCAGCTCTGGATCCTTAAGCCACCGAGTGAGGCCAGGAAGTGAACCCGAACCTGCACCC
TCACGGACACTGTGTGTCTGGTCCTTAACCCACTGAGCCACAAGGGGAGCTCCCTCTGGC
TTTTTTCAACTTCTCCTTGACTCTCGGGGTGGAGGGGGGGGCTGTCCTCAGGCCTCACCT
GTAGCAGCTCCAGCATGGGGCCCCGACTCCTCCGCTCCAGCTCTGCGATCAGCTCCTGCA
GGGCCTGGCTCTGCTGGGCCAGCCTGGCTTCTGTGGCCCCCAGGGCTTTCAGCTGTTCCC
GCTCCTCCTCCTCCACCTTCTGCAGCTGCCTCTGCTCCTCTTCTGCCAGGAAGTTTTTCT
GCCGGACAAACTCTTCGTGGATCCTCAGTTTGTGGGCCTCAACCTTCCCCTTCCAGGCTG
CTCTCTTCGTTGCAATATCCGCTTCCAGCTTCTCAGCCTGCTCCTGTTTATTTCTGAGTT
TCTCGAGTGCCACCTGGAGCTTCTCCTGGTACTCCTGAGCCGCCTCCTCAATGGGGACCA
TGGTGTGGTCCCGGTGTTTCTGGGACTGGGAACACACCCAGCAAAGGACCTTCCCATCGT
CCTTACAGAACAGGTGAAGCTTCTCTCCGTGCACCGCACACAGCTCCCACTGCGGGCCTT
CCTTGACCCCCTGGCTCATCTCTTTGAGGTTATCCACCATGTTGGCCACCTGCCGATTGG
GCCGGAGGTTCCTGAGCAGGAAGTGCTGCCGGCACACAGGACAGACGCTGCCCCCATCCT
TCCCAACCTCGGAGATGCATTCCTGGCAGAAGCTGTGGCCACATTCGATGCTCACGGGCT
CCACCATGGGATCCAGGCAGATGGAGCACGTGACCTCATCCCACATCCTTGCCAAGGGCA
GTGCTGAGGCCATGGTGCTGCCGGGCTATGAAGCAGCGCTGAGGAGATCTCGGGGTGGCC
TTTTCAAGGGACTCCGCAGATAATAGCTGGCTCCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|32307867|gb|AAP79314.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|32307867|gb|AAP79314.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               614-732, - strand, RNAz p=0.523033

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               614-732, - strand, RNAz p=0.523033

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               236-532, gnl|bosTau2|chr15 (32315750-32315461)
               

               
               236-532, gnl|Hg17|chr11 (4366051-4366339)
               

               
               236-532, gnl|Mm7|chr7 (98612076-98612354)
               


               
               614-1077, gnl|bosTau2|chr15 (32313624-32313160)
               

               
               614-1077, gnl|Hg17|chr11 (4367799-4368269)
               

               
               614-1077, gnl|Mm7|chr7 (98614015-98614477)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               236-532, gnl|bosTau2|chr15 (32315750-32315461)
               

               
               236-532, gnl|Hg17|chr11 (4366051-4366339)
               

               
               236-532, gnl|Mm7|chr7 (98612076-98612354)
               


               
               614-1077, gnl|bosTau2|chr15 (32313624-32313160)
               

               
               614-1077, gnl|Hg17|chr11 (4367799-4368269)
               

               
               614-1077, gnl|Mm7|chr7 (98614015-98614477)

	236-532, gnl\|bosTau2\|chr15 (32315750-32315461)
	236-532, gnl\|Hg17\|chr11 (4366051-4366339)
	236-532, gnl\|Mm7\|chr7 (98612076-98612354)

	614-1077, gnl\|bosTau2\|chr15 (32313624-32313160)
	614-1077, gnl\|Hg17\|chr11 (4367799-4368269)
	614-1077, gnl\|Mm7\|chr7 (98614015-98614477)