Non-Coding RNA Search

Ss1.1-Ova1-OVR010018H04.5

Sequence:


               
               AGTGGCCTGAATAACCACGGCCACCCCGTGCTGTCTGTCCACTGCTACCTTAACCTGGGG
TCACATATCTCTGTGTGTTACGTGAGCTCCAGGCCCCACTCTTTAAACATCAGCTGCTCC
TACTTCATGTTCAGTGGCCTCCTGCTGTACCTCTGTGACTCTTTTGTGGGAGCCGGCTTT
TTGAAAAAGTTTCATTTTCTGAAAGGTGCGACCTTGTGTGTCATCTGCCAGGACCGGAAC
TCACTCCGCCAGACGGTCGTCCGCCTGGAGCTGGAAGACGAGTGGCAGTTCCGGCTGCGA
GACGAGTTCCAGACGGCCAACGCCAAGGAGGACCGGCCCCTCTTCTTTCTGACCGGCCGG
CACATCTGAGGGAGGAGCCTGCAGAGCCTCGCGCTGCTGAGGCCAAAGGAAGAATCAGAA
CCACGGGGTGTCTGGACTGGACCGGGCCCCAGCGAGCCCCTCGTGGTACGTGCCAGGGAA
GCGAGGCCCAGAGACGGATGGGAGCGACGGGGATGGTGGATGGCGAGCAGCAACGCAAAT
CCTAGACCCTAGGTTCCGGGCCAGACCCCACCGCCCTGGGCCGTGTCCAAGTCCATTTTT
CTGAAGAACCATGTTTTCCCGACGTCGCCGCATCCACATGCTTCCGTGGACAAACCTGAC
TTTTCTCTTAGTCCCGAGGGATCACTCTTGGAGGGCCTTGTAGACGTGCCAGCATTGCAG
ATGACGGCTCTGATTTGGGTGGTGTAGGCGTCCCTGTTACCTGCGACAAAGCAATGTTCC
CAAAGCACCGTTTTAATTGTAAAGGTTGGAGACCAGACACCACCAAGCGGGTCATTTAAT
GAGAATCATGCACGTTTGCTCTTGTAGAAGCTCGCCCACAGGCATCACATTCAGAAAGGA
AAACTCTAGTTTCGGTTCAGAGCAAATGTGATTCTGATAGTGTAGGGTAAACACCCTACC
TCTTAGAAAGGGCAAAAGTGAAAAGAAACTTAAAAAAAAAAAAGCCAACTGCAAAAGTTT
CAGGAAGGAAGTTAGAGTTACAGAGGTTGACCTTGAAAAAGATGATTTGCCTTACAAAGG
AAAGAGGCCCCAGTGGCTTCAAACAGGGAAAACAACCAAAGCAAGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGGCCTGAATAACCACGGCCACCCCGTGCTGTCTGTCCACTGCTACCTTAACCTGGGG
TCACATATCTCTGTGTGTTACGTGAGCTCCAGGCCCCACTCTTTAAACATCAGCTGCTCC
TACTTCATGTTCAGTGGCCTCCTGCTGTACCTCTGTGACTCTTTTGTGGGAGCCGGCTTT
TTGAAAAAGTTTCATTTTCTGAAAGGTGCGACCTTGTGTGTCATCTGCCAGGACCGGAAC
TCACTCCGCCAGACGGTCGTCCGCCTGGAGCTGGAAGACGAGTGGCAGTTCCGGCTGCGA
GACGAGTTCCAGACGGCCAACGCCAAGGAGGACCGGCCCCTCTTCTTTCTGACCGGCCGG
CACATCTGAGGGAGGAGCCTGCAGAGCCTCGCGCTGCTGAGGCCAAAGGAAGAATCAGAA
CCACGGGGTGTCTGGACTGGACCGGGCCCCAGCGAGCCCCTCGTGGTACGTGCCAGGGAA
GCGAGGCCCAGAGACGGATGGGAGCGACGGGGATGGTGGATGGCGAGCAGCAACGCAAAT
CCTAGACCCTAGGTTCCGGGCCAGACCCCACCGCCCTGGGCCGTGTCCAAGTCCATTTTT
CTGAAGAACCATGTTTTCCCGACGTCGCCGCATCCACATGCTTCCGTGGACAAACCTGAC
TTTTCTCTTAGTCCCGAGGGATCACTCTTGGAGGGCCTTGTAGACGTGCCAGCATTGCAG
ATGACGGCTCTGATTTGGGTGGTGTAGGCGTCCCTGTTACCTGCGACAAAGCAATGTTCC
CAAAGCACCGTTTTAATTGTAAAGGTTGGAGACCAGACACCACCAAGCGGGTCATTTAAT
GAGAATCATGCACGTTTGCTCTTGTAGAAGCTCGCCCACAGGCATCACATTCAGAAAGGA
AAACTCTAGTTTCGGTTCAGAGCAAATGTGATTCTGATAGTGTAGGGTAAACACCCTACC
TCTTAGAAAGGGCAAAAGTGAAAAGAAACTTAAAAAAAAAAAAGCCAACTGCAAAAGTTT
CAGGAAGGAAGTTAGAGTTACAGAGGTTGACCTTGAAAAAGATGATTTGCCTTACAAAGG
AAAGAGGCCCCAGTGGCTTCAAACAGGGAAAACAACCAAAGCAAGACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61868388|ref|XP_582275.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61868388|ref|XP_582275.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               882-1025, - strand, RNAz p=0.634149

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               882-1025, - strand, RNAz p=0.634149

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               204-1122, gnl|bosTau2|chr11 (66173854-66174819)
               

               
               204-1122, gnl|Hg17|chr2 (11731013-11731981)
               

               
               204-1122, gnl|Mm7|chr12 (16727130-16726179)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               204-1122, gnl|bosTau2|chr11 (66173854-66174819)
               

               
               204-1122, gnl|Hg17|chr2 (11731013-11731981)
               

               
               204-1122, gnl|Mm7|chr12 (16727130-16726179)

	204-1122, gnl\|bosTau2\|chr11 (66173854-66174819)
	204-1122, gnl\|Hg17\|chr2 (11731013-11731981)
	204-1122, gnl\|Mm7\|chr12 (16727130-16726179)