Non-Coding RNA Search

Ss1.1-Ova1-OVR010025B11.5

Sequence:


               
               AGTGCCGCCGCCCGCCGGGCATGGGGAGCCGCTTTCTGGGCGGCTGCGGCTGCAGAGGAG
GATGCTCTCGACGAGCCGAGCGCTCGGAAGAACTGAATGAAATGTGCAGCTGTCGGTGTC
ATTTCTGAAGGGAGGACTCGTTTTCTTGGAGAAGAGGCCTCAATGAGCCTGGCCGAGGCC
CGGGATCTGTGTGAAGTGGACTAAGGATTTAGTAGGATGTCAACTGAGACAGAACTTCAA
GTAGCTGTGAAAACCAGCGCCAAGAAAGACTCCAGAAAGAAAGGTAGGGCTCAAGCTGTT
CCTATCCTAATATCTACTCTTGTGTAGGAATGAGGTCGGTACAAGGCCAAACTGATTGGG
ATTGATGAGGTTTCCGCCGCTCGGGGAGACAAGTTATGCCAAGACTCTATGATGAAACTC
AAGGGCGTTGTGGCTGGCGCTCGTTCCAAAGGAGAACACAAACAGAAAATCTTTTTAACC
ATCTCCTTTGGAGGCATCAAAATCTTTGATGAGAAGACAGGGGCTCTTCAGCATCATCAT
GCTGTTCACGAAATTTCCTACATCGCCAAGGACATCACAGATCACCGGGCCTTTGGATAC
GTTTGTGGGAAGGAAGGGAATCACAGATTTGTGGCCATAAAAACAGCCCAGGCGGCTGAA
CCTGTTATTCTGGACCTAAGAGATCTCTTTCAACTTATTTATGAATTGAAGCAAAGAGAA
GAATTGGAAAAAAAAGGCACAAAAGGATAAGCAGTGCGAACAAGCGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGCCGCCGCCCGCCGGGCATGGGGAGCCGCTTTCTGGGCGGCTGCGGCTGCAGAGGAG
GATGCTCTCGACGAGCCGAGCGCTCGGAAGAACTGAATGAAATGTGCAGCTGTCGGTGTC
ATTTCTGAAGGGAGGACTCGTTTTCTTGGAGAAGAGGCCTCAATGAGCCTGGCCGAGGCC
CGGGATCTGTGTGAAGTGGACTAAGGATTTAGTAGGATGTCAACTGAGACAGAACTTCAA
GTAGCTGTGAAAACCAGCGCCAAGAAAGACTCCAGAAAGAAAGGTAGGGCTCAAGCTGTT
CCTATCCTAATATCTACTCTTGTGTAGGAATGAGGTCGGTACAAGGCCAAACTGATTGGG
ATTGATGAGGTTTCCGCCGCTCGGGGAGACAAGTTATGCCAAGACTCTATGATGAAACTC
AAGGGCGTTGTGGCTGGCGCTCGTTCCAAAGGAGAACACAAACAGAAAATCTTTTTAACC
ATCTCCTTTGGAGGCATCAAAATCTTTGATGAGAAGACAGGGGCTCTTCAGCATCATCAT
GCTGTTCACGAAATTTCCTACATCGCCAAGGACATCACAGATCACCGGGCCTTTGGATAC
GTTTGTGGGAAGGAAGGGAATCACAGATTTGTGGCCATAAAAACAGCCCAGGCGGCTGAA
CCTGTTATTCTGGACCTAAGAGATCTCTTTCAACTTATTTATGAATTGAAGCAAAGAGAA
GAATTGGAAAAAAAAGGCACAAAAGGATAAGCAGTGCGAACAAGCGGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|30749751|pdb|1NU2|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|30749751|pdb|1NU2|A

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               118-237, - strand, RNAz p=0.515009

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-237, - strand, RNAz p=0.515009

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               79-332, gnl|bosTau2|chr3 (59534578-59534324)
               

               
               79-332, gnl|Hg17|chr1 (57468861-57468606)
               

               
               79-332, gnl|Mm7|chr4 (103855511-103855764)
               


               
               522-655, gnl|bosTau2|chr3 (59303304-59303171)
               

               
               522-655, gnl|Hg17|chr1 (57250109-57249976)
               

               
               522-655, gnl|Mm7|chr4 (104055140-104055273)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               79-332, gnl|bosTau2|chr3 (59534578-59534324)
               

               
               79-332, gnl|Hg17|chr1 (57468861-57468606)
               

               
               79-332, gnl|Mm7|chr4 (103855511-103855764)
               


               
               522-655, gnl|bosTau2|chr3 (59303304-59303171)
               

               
               522-655, gnl|Hg17|chr1 (57250109-57249976)
               

               
               522-655, gnl|Mm7|chr4 (104055140-104055273)

	79-332, gnl\|bosTau2\|chr3 (59534578-59534324)
	79-332, gnl\|Hg17\|chr1 (57468861-57468606)
	79-332, gnl\|Mm7\|chr4 (103855511-103855764)

	522-655, gnl\|bosTau2\|chr3 (59303304-59303171)
	522-655, gnl\|Hg17\|chr1 (57250109-57249976)
	522-655, gnl\|Mm7\|chr4 (104055140-104055273)