Ss1.1-Ova1-OVR010025D08.5
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CATTTCAAGTACAATTTATTGAACTCAAGATACTTTAAACAAATCCACCTTTTATTTTGA
ACTAGAATGAATATCTTGGAAGTGCCATCAACCTAATAAAGAGGTTGTTAGGAGCCCCTA
TAGATCTTTCTGGAATCTTCCAAGGCAACTTTTGAAAAACAGGCTCTTTTGAGAGCTTGA
TAGATCACATATAAAACTTTCCATCCCGATATTGTCTCATGCAAATCCAAGTCATGTAAC
TAGCCTCCAAAAGAGGTACTTGTTGATTAGCTGGTATAACAAGCAGCAAGATTTTTTTAA
GCTGAAGGTGTATTTAATAATTAAAGGTCACCTTTCTTTAACTTTATTTAAATTCCTCAG
TTTTGCTTCTGTATTTCCTTATCAGTTGGACTTCTGGCCTGAGTTGTGCTATTTTTCTGC
CTATTCACTCTTTTTAATCATTAGGGTAGGGATTTTAAAGGTGGCTGTCTTATTCATGGC
AGAGGCAATTGACTTGGTGCTGGTGCCATATTGTTTGTTTCTGCTGTCTCTTTCCATTTG
CCTCTAGAGTAAAGAAAAGATTGAAAAACTAAAACTTCAGGCTGAATCCTTCTGCCAGCG
TTTGGGGAAATACCGGATGCCCTTTGCCTGGGCTCCCATAAGCTTAGCAAGTTTCTTCAG
TGTCTCTACCCTGGACAGGGAGGTAACCGACGTGGAGTCCATGGTTGGTAAGCTTTTCAA
CTGTGATGTGAAGGGAAGGGCTCCCCAGTGTACCACCTCTGAGGTCAGATGCTTGGTGGT
GGGGACTTGGGGTACAGTAAGGTGAGGGGATGGGAAGGAAGAGGAGATGAATAGGGTGAA
ATGCGGTTGCAACTAGATTAGAGATGTTTGATTACACAGAGATCCAAGATAATTATCATG
AACTTTGTAGCATTTAAACATACTCTTGTAATAAGTTTGGTTGGAATTTTCTGTATAGTT
TGACACTTTATA------------------------------------------------
------------------------CAATCCTGGTTC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CATTTCAAGTACAATTTATTGAACTCAAGATACTTTAAACAAATCCACCTTTTATTTTGA
ACTAGAATGAATATCTTGGAAGTGCCATCAACCTAATAAAGAGGTTGTTAGGAGCCCCTA
TAGATCTTTCTGGAATCTTCCAAGGCAACTTTTGAAAAACAGGCTCTTTTGAGAGCTTGA
TAGATCACATATAAAACTTTCCATCCCGATATTGTCTCATGCAAATCCAAGTCATGTAAC
TAGCCTCCAAAAGAGGTACTTGTTGATTAGCTGGTATAACAAGCAGCAAGATTTTTTTAA
GCTGAAGGTGTATTTAATAATTAAAGGTCACCTTTCTTTAACTTTATTTAAATTCCTCAG
TTTTGCTTCTGTATTTCCTTATCAGTTGGACTTCTGGCCTGAGTTGTGCTATTTTTCTGC
CTATTCACTCTTTTTAATCATTAGGGTAGGGATTTTAAAGGTGGCTGTCTTATTCATGGC
AGAGGCAATTGACTTGGTGCTGGTGCCATATTGTTTGTTTCTGCTGTCTCTTTCCATTTG
CCTCTAGAGTAAAGAAAAGATTGAAAAACTAAAACTTCAGGCTGAATCCTTCTGCCAGCG
TTTGGGGAAATACCGGATGCCCTTTGCCTGGGCTCCCATAAGCTTAGCAAGTTTCTTCAG
TGTCTCTACCCTGGACAGGGAGGTAACCGACGTGGAGTCCATGGTTGGTAAGCTTTTCAA
CTGTGATGTGAAGGGAAGGGCTCCCCAGTGTACCACCTCTGAGGTCAGATGCTTGGTGGT
GGGGACTTGGGGTACAGTAAGGTGAGGGGATGGGAAGGAAGAGGAGATGAATAGGGTGAA
ATGCGGTTGCAACTAGATTAGAGATGTTTGATTACACAGAGATCCAAGATAATTATCATG
AACTTTGTAGCATTTAAACATACTCTTGTAATAAGTTTGGTTGGAATTTTCTGTATAGTT
TGACACTTTATA------------------------------------------------
------------------------CAATCCTGGTTC
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
4-284, gnl|bosTau2|chr8 (21880016-21880281) |
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4-284, gnl|canFam2|chr1 (92321496-92321942) |
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4-284, gnl|dasNov1|scaffold_75431 (48084-48533) |
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4-284, gnl|hg17|chr9 (323637-324061) |
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4-284, gnl|Hg17|chr9 (323674-324048) |
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4-284, gnl|loxAfr1|scaffold_1103 (88427-87962) |
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4-284, gnl|mm7|chr19 (24794910-24795338) |
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4-284, gnl|oryCun1|scaffold_174877 (143294-142960) |
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4-284, gnl|panTro1|chr11_random (15633741-15634171) |
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4-284, gnl|rheMac2|chr15 (76880341-76879913) |
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4-284, gnl|rn3|chr1 (228697619-228698027) |
| |
|
519-970, gnl|bosTau2|chr8 (21880347-21880791) |
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519-970, gnl|Hg17|chr9 (324064-324638) |
|
519-970, gnl|Mm7|chr19 (24795438-24795967) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
4-284, gnl|bosTau2|chr8 (21880016-21880281) |
|
4-284, gnl|canFam2|chr1 (92321496-92321942) |
|
4-284, gnl|dasNov1|scaffold_75431 (48084-48533) |
|
4-284, gnl|hg17|chr9 (323637-324061) |
|
4-284, gnl|Hg17|chr9 (323674-324048) |
|
4-284, gnl|loxAfr1|scaffold_1103 (88427-87962) |
|
4-284, gnl|mm7|chr19 (24794910-24795338) |
|
4-284, gnl|oryCun1|scaffold_174877 (143294-142960) |
|
4-284, gnl|panTro1|chr11_random (15633741-15634171) |
|
4-284, gnl|rheMac2|chr15 (76880341-76879913) |
|
4-284, gnl|rn3|chr1 (228697619-228698027) |
| |
|
519-970, gnl|bosTau2|chr8 (21880347-21880791) |
|
519-970, gnl|Hg17|chr9 (324064-324638) |
|
519-970, gnl|Mm7|chr19 (24795438-24795967) |
