Ss1.1-Ova1-OVR010026B09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGAAAAGTAAGAAGAGCTTTCCTGCCTTTTTAATAAAATGGCGGACGGAGGAGCAGCG AGTCAAGATGAGAGTTCAGCCGCGGCGGCAGCAGCAGCAGACTCAAGAATGAACAATCCG TCAGAAACCAGTAAACCATCTATGGAGAGTGGAGATAGCAACACAGGCACACAAACCAAT GGTCTGGACTTTCAAAAGCAGCCTGTGCCTGTTGGAGGAGCAATTTCAACAGCCCAGGCC CAGGCTTTCCTTGGACATCTCCATCAGGTCCAGCTCGCTGGAACAAGTTTACAGGCTGCT GCTCAGTCATTAAATGTACAGTCTAAATCTAATGAAGAATCTGGGGATTCACAGCAGCCA AGCCAGCCTTCTCAGCAGCCTTCAGTGCAGGCTGCCATCCCCCAGACCCAGCTTATGTTG GCTGGAGGACAGATAACTGGGCTGACTTTGACACCAGCCCAGCAACAGTTATTACTACAG CAGGCACAGGCACAGGCACAGCTGCTGGCTGCGGCAGTGCAGCAGCATTCCGCCAGCCAA CAGCACAGTGCTGCTGGGGCCACCATCTCAGCCTCCGCCGCCACTCCCATGACGCAGATC CCGCTCTCTCAGCCCATACAGATCGCACAGGATCTGCAACAACTGCAACAACTACAACAG CAGAATCTCAACCTGCAACAGTTTGTGTTGGTACATCCAACCACCAACCTGCAACCAGCA CAGTTTATCATCTCACAGACGCCCCAGGGCCAGCAGGGTCTCCTGCAAGCGCAAAATCTT TTAACGCAACTACCTCAGCAAAGCCAAGCCAACCTCCTACAGTCGCAGCCAAGCATCACC CTCACCTCCCAGCCAGCAACCCCAACACGCACAATAGCAGCAACCCCAATTCAGACACTT CCACAGAGCCAGTCAACACCAAAGCGAATTGATACTCCCAGCTTGGAGGAGCCCAGTGAC CTTGAGGAGCTTGAGCAGTTTGCCAAGACCTTTAAACAAAGACGAATCAAACTTGGATTC ACTCAGGGCGATGTTGGGCTTGCTATGGGTAAACTGTATGGAAATGACTTCAGCCAAACT ACCATCTCTCGTTTTGAAGCCTTGAACCTCAGCTTTAAGAACATGTGCAAGTTAAAGCCA CTTCTGGAGAAGTGGCTAAATGATGCAGAGAACCTCTCATCTGATTCGGCTCTCTCCAGC CCAAGTGCCCTGAATTCTCCAGGGCTGGGAGTTGAGGGCTTGAACCGTAGGAGGAAAAAA CGCACCAGCATAGAGACCAACATCCGTGTGGCCTTAGAGAAGAGTTTCTTGGAGAATCAA AAGCCTACCTCGGAAGAGATCACCATGATTGCTGATCAGCTTAATATGGAAAAAGAAGTG ATACGTGTTTGGTTTTGTAACCGCCGCCAGAAAGAAAAAAGAATCAACCCACCAAGCAGT GGTGGGACCAGCAGCTCACCTATCAAAGCAATTTTCCCCAGCCCAACCTCACTGGTGGCA ACCACGCCAAGCCTTGTGACAAGCAGTGCAGCAACTACCCTCACAGTCAATCCAGTCCTT CCTCTAACTAGCGCTGCGGTAACTAATCTCTCTGTTACAGGCACTACAGACACCACCTCC AACAACACTGCAACCGTGATTTCCACAGCGCCTCCGGCTTCCTCAGCAGTCACTTCCCCC TCTCTGAGTCCCTCCCCTTCTGCCTCAGCCTCCACCTCCGAGGCATCTAGTGCCAGTGAG ACCAGCACAACACAGACCACCTCCACTCCCTTGTCCTCTCCTCTTGGGACCAGCCAGGTG ATGGTGACAGCGTCAGGGTTGCAAACAGCAGCAGCTGCTGCCCTCCAAGGAGCTGCACAG TTGCCAGCAAATGCCAGTCTTGCTGCCATGGCTGCTGCTGCAGGACTAAACCCAGGCCTG ATGGCACCCTCACAGTTTGCAGCTGGAGGTGCCTTACTCAGTCTCAATCCAGGGACCCTG GGCGGTGCTCTCAGCCCTGCACTGATGAGCAACAGTACACTGGCAACTATCCAAGCTCTT GCTTCTGGTGGCTCTCTTCCAATAACGTCACTGGACGCGACTGGGAACCTGGTATTTGCC AATGCAGGAGGAGCCCCCAACATCGTGACTGCCCCTCTGTTCCTGAACCCTCAGAACCTC TCTCTGCTCACCAGCAACCCAGTTAGCTTGGTCTCTGCCGCTGCAGCCTCTGCAGGGAAC TCTGGACCTGTAGCCAGCCTTCATGCCACCTCCACCTCAGCTGAGTCCATCCAGAACTCT CTCTTCACAGTCGCCTCTGCCAGCGGGGCTGCCTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGAAAAGTAAGAAGAGCTTTCCTGCCTTTTTAATAAAATGGCGGACGGAGGAGCAGCG AGTCAAGATGAGAGTTCAGCCGCGGCGGCAGCAGCAGCAGACTCAAGAATGAACAATCCG TCAGAAACCAGTAAACCATCTATGGAGAGTGGAGATAGCAACACAGGCACACAAACCAAT GGTCTGGACTTTCAAAAGCAGCCTGTGCCTGTTGGAGGAGCAATTTCAACAGCCCAGGCC CAGGCTTTCCTTGGACATCTCCATCAGGTCCAGCTCGCTGGAACAAGTTTACAGGCTGCT GCTCAGTCATTAAATGTACAGTCTAAATCTAATGAAGAATCTGGGGATTCACAGCAGCCA AGCCAGCCTTCTCAGCAGCCTTCAGTGCAGGCTGCCATCCCCCAGACCCAGCTTATGTTG GCTGGAGGACAGATAACTGGGCTGACTTTGACACCAGCCCAGCAACAGTTATTACTACAG CAGGCACAGGCACAGGCACAGCTGCTGGCTGCGGCAGTGCAGCAGCATTCCGCCAGCCAA CAGCACAGTGCTGCTGGGGCCACCATCTCAGCCTCCGCCGCCACTCCCATGACGCAGATC CCGCTCTCTCAGCCCATACAGATCGCACAGGATCTGCAACAACTGCAACAACTACAACAG CAGAATCTCAACCTGCAACAGTTTGTGTTGGTACATCCAACCACCAACCTGCAACCAGCA CAGTTTATCATCTCACAGACGCCCCAGGGCCAGCAGGGTCTCCTGCAAGCGCAAAATCTT TTAACGCAACTACCTCAGCAAAGCCAAGCCAACCTCCTACAGTCGCAGCCAAGCATCACC CTCACCTCCCAGCCAGCAACCCCAACACGCACAATAGCAGCAACCCCAATTCAGACACTT CCACAGAGCCAGTCAACACCAAAGCGAATTGATACTCCCAGCTTGGAGGAGCCCAGTGAC CTTGAGGAGCTTGAGCAGTTTGCCAAGACCTTTAAACAAAGACGAATCAAACTTGGATTC ACTCAGGGCGATGTTGGGCTTGCTATGGGTAAACTGTATGGAAATGACTTCAGCCAAACT ACCATCTCTCGTTTTGAAGCCTTGAACCTCAGCTTTAAGAACATGTGCAAGTTAAAGCCA CTTCTGGAGAAGTGGCTAAATGATGCAGAGAACCTCTCATCTGATTCGGCTCTCTCCAGC CCAAGTGCCCTGAATTCTCCAGGGCTGGGAGTTGAGGGCTTGAACCGTAGGAGGAAAAAA CGCACCAGCATAGAGACCAACATCCGTGTGGCCTTAGAGAAGAGTTTCTTGGAGAATCAA AAGCCTACCTCGGAAGAGATCACCATGATTGCTGATCAGCTTAATATGGAAAAAGAAGTG ATACGTGTTTGGTTTTGTAACCGCCGCCAGAAAGAAAAAAGAATCAACCCACCAAGCAGT GGTGGGACCAGCAGCTCACCTATCAAAGCAATTTTCCCCAGCCCAACCTCACTGGTGGCA ACCACGCCAAGCCTTGTGACAAGCAGTGCAGCAACTACCCTCACAGTCAATCCAGTCCTT CCTCTAACTAGCGCTGCGGTAACTAATCTCTCTGTTACAGGCACTACAGACACCACCTCC AACAACACTGCAACCGTGATTTCCACAGCGCCTCCGGCTTCCTCAGCAGTCACTTCCCCC TCTCTGAGTCCCTCCCCTTCTGCCTCAGCCTCCACCTCCGAGGCATCTAGTGCCAGTGAG ACCAGCACAACACAGACCACCTCCACTCCCTTGTCCTCTCCTCTTGGGACCAGCCAGGTG ATGGTGACAGCGTCAGGGTTGCAAACAGCAGCAGCTGCTGCCCTCCAAGGAGCTGCACAG TTGCCAGCAAATGCCAGTCTTGCTGCCATGGCTGCTGCTGCAGGACTAAACCCAGGCCTG ATGGCACCCTCACAGTTTGCAGCTGGAGGTGCCTTACTCAGTCTCAATCCAGGGACCCTG GGCGGTGCTCTCAGCCCTGCACTGATGAGCAACAGTACACTGGCAACTATCCAAGCTCTT GCTTCTGGTGGCTCTCTTCCAATAACGTCACTGGACGCGACTGGGAACCTGGTATTTGCC AATGCAGGAGGAGCCCCCAACATCGTGACTGCCCCTCTGTTCCTGAACCCTCAGAACCTC TCTCTGCTCACCAGCAACCCAGTTAGCTTGGTCTCTGCCGCTGCAGCCTCTGCAGGGAAC TCTGGACCTGTAGCCAGCCTTCATGCCACCTCCACCTCAGCTGAGTCCATCCAGAACTCT CTCTTCACAGTCGCCTCTGCCAGCGGGGCTGCCTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 174-1944, - strand, RNAz p=0.909899 | |
| 441-1946, - strand, RNAz p=0.903406 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 174-1944, - strand, RNAz p=0.909899 | |
| 441-1946, - strand, RNAz p=0.903406 |
| Aligned organism(s): 76 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
| 165-269, gnl|bosTau2|chr3 (19672-19568) | |
| 165-269, gnl|canFam2|chr7 (34002025-34001884) | |
| 165-269, gnl|danRer3|chr9 (31265098-31265224) | |
| 165-269, gnl|dasNov1|scaffold_7179 (49649-49508) | |
| 165-269, gnl|echTel1|scaffold_290371 (29989-29847) | |
| 165-269, gnl|galGal2|chr1 (85610583-85610457) | |
| 165-269, gnl|hg17|chr1 (164066341-164066483) | |
| 165-269, gnl|Hg17|chr1 (164066360-164066464) | |
| 165-269, gnl|mm7|chr1 (165887755-165887618) | |
| 165-269, gnl|Mm7|chr1 (165887736-165887632) | |
| 165-269, gnl|monDom2|scaffold_16 (18170004-18170145) | |
| 165-269, gnl|panTro1|chr1 (146319610-146319752) | |
| 165-269, gnl|rheMac2|chr1 (197099524-197099666) | |
| 165-269, gnl|rn3|chr13 (81667358-81667221) | |
| 165-269, gnl|tetNig1|chr2 (9218537-9218436) | |
| 165-269, gnl|xenTro1|scaffold_1583 (101485-101617) | |
| 441-629, gnl|bosTau2|chr3 (10159-9971) | |
| 441-629, gnl|canFam2|chr7 (33991896-33991686) | |
| 441-629, gnl|danRer3|chr9 (31267062-31267263) | |
| 441-629, gnl|dasNov1|scaffold_7179 (40492-40282) | |
| 441-629, gnl|echTel1|scaffold_284371 (55842-56053) | |
| 441-629, gnl|fr1|chrUn (203948039-203948229) | |
| 441-629, gnl|galGal2|chr1 (85604161-85603952) | |
| 441-629, gnl|hg17|chr1 (164074984-164075194) | |
| 441-629, gnl|Hg17|chr1 (164075002-164075190) | |
| 441-629, gnl|loxAfr1|scaffold_48483 (9295-9085) | |
| 441-629, gnl|mm7|chr1 (165882205-165881999) | |
| 441-629, gnl|Mm7|chr1 (165882189-165882001) | |
| 441-629, gnl|monDom2|scaffold_16 (18200527-18200724) | |
| 441-629, gnl|oryCun1|scaffold_184207 (6420-6210) | |
| 441-629, gnl|panTro1|chr1 (146328231-146328441) | |
| 441-629, gnl|rheMac2|chr1 (197108101-197108311) | |
| 441-629, gnl|rn3|chr13 (81661099-81660893) | |
| 441-629, gnl|tetNig1|chr2 (9216816-9216632) | |
| 441-629, gnl|xenTro1|scaffold_1583 (113769-113971) | |
| 964-1169, gnl|bosTau2|chr11 (6550877-6551082) | |
| 964-1169, gnl|canFam2|chr10 (41636597-41636368) | |
| 964-1169, gnl|danRer3|chr11 (25317796-25317567) | |
| 964-1169, gnl|dasNov1|scaffold_1426 (34660-34889) | |
| 964-1169, gnl|echTel1|scaffold_294480 (183159-182930) | |
| 964-1169, gnl|fr1|chrUn (88817807-88818036) | |
| 964-1169, gnl|galGal2|chrUn (112652887-112652658) | |
| 964-1169, gnl|hg17|chr2 (104931407-104931636) | |
| 964-1169, gnl|Hg17|chr2 (104931444-104931649) | |
| 964-1169, gnl|loxAfr1|scaffold_69646 (7801-7574) | |
| 964-1169, gnl|mm7|chr1 (42938442-42938671) | |
| 964-1169, gnl|Mm7|chr1 (42938479-42938684) | |
| 964-1169, gnl|monDom2|scaffold_11 (23685352-23685581) | |
| 964-1169, gnl|oryCun1|scaffold_110578 (10042-9816) | |
| 964-1169, gnl|panTro1|chr12 (107904609-107904838) | |
| 964-1169, gnl|rheMac2|chr4 (94785944-94786173) | |
| 964-1169, gnl|rn3|chr9 (41875686-41875915) | |
| 964-1169, gnl|tetNig1|chr3 (242412-242641) | |
| 964-1169, gnl|xenTro1|scaffold_343 (1069129-1068900) | |
| 1591-1946, gnl|bosTau2|chr3 (97105-97460) | |
| 1591-1946, gnl|canFam2|chr7 (33959719-33959354) | |
| 1591-1946, gnl|danRer3|chr9 (31279105-31279468) | |
| 1591-1946, gnl|dasNov1|scaffold_65493 (9284-8918) | |
| 1591-1946, gnl|echTel1|scaffold_315831 (57765-57386) | |
| 1591-1946, gnl|fr1|chrUn (203950816-203951161) | |
| 1591-1946, gnl|galGal2|chr1 (85573624-85573266) | |
| 1591-1946, gnl|hg17|chr1 (164112839-164113207) | |
| 1591-1946, gnl|Hg17|chr1 (164112843-164113199) | |
| 1591-1946, gnl|loxAfr1|scaffold_41541 (4070-4439) | |
| 1591-1946, gnl|mm7|chr1 (165851204-165850836) | |
| 1591-1946, gnl|Mm7|chr1 (165851198-165850842) | |
| 1591-1946, gnl|monDom2|scaffold_16 (18246824-18247190) | |
| 1591-1946, gnl|oryCun1|scaffold_181542 (62562-62194) | |
| 1591-1946, gnl|panTro1|chr1 (146366136-146366503) | |
| 1591-1946, gnl|rheMac2|chr1 (197145462-197145830) | |
| 1591-1946, gnl|rn3|chr13 (81625510-81625142) | |
| 1591-1946, gnl|tetNig1|chr2 (9214509-9214140) | |
| 1591-1946, gnl|xenTro1|scaffold_159 (2382-2745) | |
| 2034-2316, gnl|bosTau2|chr3 (99845-100127) | |
| 2034-2316, gnl|Hg17|chr1 (164116393-164116675) | |
| 2034-2316, gnl|Mm7|chr1 (165846762-165846480) |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 165-269, gnl|bosTau2|chr3 (19672-19568) | |
| 165-269, gnl|canFam2|chr7 (34002025-34001884) | |
| 165-269, gnl|danRer3|chr9 (31265098-31265224) | |
| 165-269, gnl|dasNov1|scaffold_7179 (49649-49508) | |
| 165-269, gnl|echTel1|scaffold_290371 (29989-29847) | |
| 165-269, gnl|galGal2|chr1 (85610583-85610457) | |
| 165-269, gnl|hg17|chr1 (164066341-164066483) | |
| 165-269, gnl|Hg17|chr1 (164066360-164066464) | |
| 165-269, gnl|mm7|chr1 (165887755-165887618) | |
| 165-269, gnl|Mm7|chr1 (165887736-165887632) | |
| 165-269, gnl|monDom2|scaffold_16 (18170004-18170145) | |
| 165-269, gnl|panTro1|chr1 (146319610-146319752) | |
| 165-269, gnl|rheMac2|chr1 (197099524-197099666) | |
| 165-269, gnl|rn3|chr13 (81667358-81667221) | |
| 165-269, gnl|tetNig1|chr2 (9218537-9218436) | |
| 165-269, gnl|xenTro1|scaffold_1583 (101485-101617) | |
| 441-629, gnl|bosTau2|chr3 (10159-9971) | |
| 441-629, gnl|canFam2|chr7 (33991896-33991686) | |
| 441-629, gnl|danRer3|chr9 (31267062-31267263) | |
| 441-629, gnl|dasNov1|scaffold_7179 (40492-40282) | |
| 441-629, gnl|echTel1|scaffold_284371 (55842-56053) | |
| 441-629, gnl|fr1|chrUn (203948039-203948229) | |
| 441-629, gnl|galGal2|chr1 (85604161-85603952) | |
| 441-629, gnl|hg17|chr1 (164074984-164075194) | |
| 441-629, gnl|Hg17|chr1 (164075002-164075190) | |
| 441-629, gnl|loxAfr1|scaffold_48483 (9295-9085) | |
| 441-629, gnl|mm7|chr1 (165882205-165881999) | |
| 441-629, gnl|Mm7|chr1 (165882189-165882001) | |
| 441-629, gnl|monDom2|scaffold_16 (18200527-18200724) | |
| 441-629, gnl|oryCun1|scaffold_184207 (6420-6210) | |
| 441-629, gnl|panTro1|chr1 (146328231-146328441) | |
| 441-629, gnl|rheMac2|chr1 (197108101-197108311) | |
| 441-629, gnl|rn3|chr13 (81661099-81660893) | |
| 441-629, gnl|tetNig1|chr2 (9216816-9216632) | |
| 441-629, gnl|xenTro1|scaffold_1583 (113769-113971) | |
| 964-1169, gnl|bosTau2|chr11 (6550877-6551082) | |
| 964-1169, gnl|canFam2|chr10 (41636597-41636368) | |
| 964-1169, gnl|danRer3|chr11 (25317796-25317567) | |
| 964-1169, gnl|dasNov1|scaffold_1426 (34660-34889) | |
| 964-1169, gnl|echTel1|scaffold_294480 (183159-182930) | |
| 964-1169, gnl|fr1|chrUn (88817807-88818036) | |
| 964-1169, gnl|galGal2|chrUn (112652887-112652658) | |
| 964-1169, gnl|hg17|chr2 (104931407-104931636) | |
| 964-1169, gnl|Hg17|chr2 (104931444-104931649) | |
| 964-1169, gnl|loxAfr1|scaffold_69646 (7801-7574) | |
| 964-1169, gnl|mm7|chr1 (42938442-42938671) | |
| 964-1169, gnl|Mm7|chr1 (42938479-42938684) | |
| 964-1169, gnl|monDom2|scaffold_11 (23685352-23685581) | |
| 964-1169, gnl|oryCun1|scaffold_110578 (10042-9816) | |
| 964-1169, gnl|panTro1|chr12 (107904609-107904838) | |
| 964-1169, gnl|rheMac2|chr4 (94785944-94786173) | |
| 964-1169, gnl|rn3|chr9 (41875686-41875915) | |
| 964-1169, gnl|tetNig1|chr3 (242412-242641) | |
| 964-1169, gnl|xenTro1|scaffold_343 (1069129-1068900) | |
| 1591-1946, gnl|bosTau2|chr3 (97105-97460) | |
| 1591-1946, gnl|canFam2|chr7 (33959719-33959354) | |
| 1591-1946, gnl|danRer3|chr9 (31279105-31279468) | |
| 1591-1946, gnl|dasNov1|scaffold_65493 (9284-8918) | |
| 1591-1946, gnl|echTel1|scaffold_315831 (57765-57386) | |
| 1591-1946, gnl|fr1|chrUn (203950816-203951161) | |
| 1591-1946, gnl|galGal2|chr1 (85573624-85573266) | |
| 1591-1946, gnl|hg17|chr1 (164112839-164113207) | |
| 1591-1946, gnl|Hg17|chr1 (164112843-164113199) | |
| 1591-1946, gnl|loxAfr1|scaffold_41541 (4070-4439) | |
| 1591-1946, gnl|mm7|chr1 (165851204-165850836) | |
| 1591-1946, gnl|Mm7|chr1 (165851198-165850842) | |
| 1591-1946, gnl|monDom2|scaffold_16 (18246824-18247190) | |
| 1591-1946, gnl|oryCun1|scaffold_181542 (62562-62194) | |
| 1591-1946, gnl|panTro1|chr1 (146366136-146366503) | |
| 1591-1946, gnl|rheMac2|chr1 (197145462-197145830) | |
| 1591-1946, gnl|rn3|chr13 (81625510-81625142) | |
| 1591-1946, gnl|tetNig1|chr2 (9214509-9214140) | |
| 1591-1946, gnl|xenTro1|scaffold_159 (2382-2745) | |
| 2034-2316, gnl|bosTau2|chr3 (99845-100127) | |
| 2034-2316, gnl|Hg17|chr1 (164116393-164116675) | |
| 2034-2316, gnl|Mm7|chr1 (165846762-165846480) |