Non-Coding RNA Search

Ss1.1-Ova1-OVR010029B11.5

Sequence:


               
               ATAAATAAATAAATAAAAGGAAGAAAGGAAGGAAGAAAAGAAAAGAAAATGCAGGAGAGA
AGAGAAGGGGGCATCCTTAGGCCAAGTCTCTCTGCCATTGACCTGGACAAAACCAAAATG
AACAAAGACCCTTAGGAAGGGTATTTTTGCAGCCCTGACTTCGTTTACCACCTTGCAGCA
GCCACGAGCTGCCCGACGTGAGCCAGCCCCGTGTACTAGGATCTCTTTGGTTTTTCTGTA
ATGAAAGTGGACTAAATAAAAGCTAACGTGATTCTCGTTGATCTGTCTGGTGCCTCTTGG
CCTTCTCTGCCCTCAGCCACATAATCCTGCTGCCTCTGTCTTGACCTCGCTGGGCACACA
TTACGAAACATGTTTGATACCAGTGGTAGAGAAATACCTCGTGGCTGAGGCCTTGAAGAA
AAGCTTCCCCCTGAAGGCCGAGAGGTAGGAGACACTCTCGACCAGCTGAAGAAAGCCAGA
AGCATTCTTCCCAGCACGCGAGCTGAGCAAGCCTGACCCGGCGTGCCCGACATTAAGCCC
CACGGAAAGGAAAGCAAAATAATTTTGTTTTATTTTATTTTTTGGTCTGGAAGGGATGAG
GAACTGTAAGCTGCTGGCATTCACTGCTCAAAAGAAGATTGGCTGGACCATACAGCCGCA
TGCCTAGACTCCTTTGTAATTTCAACTGGGATTTGTCTTGCCCAAAAATATCTGTTGAGG
TCATTCCCAAGGAGGTCTCCATTTGTTCAGCTGTTTCCTGGTACACAGAGGAAACTCGGA
ATTTTCCTTCTAGAGCAGCACAGTCCACGAGAACTTTCTGTGATGAGGGAAAGATCCCAT
ATCTGCACCGCCGAAGATGGTAGCCGCTGGCTTCACATGGCTGTTGAGCATTTGAGATGT
TGGGAGTTCCTCTCGTGGCGTAGCAGGTTAAGAACCCAGCATCGTGTCCATGAGGATTCA
AGTTTGATCTCTGGCCTTGCTCAGGGGGTTAAGGATCTGGCATGGCTA------------
GCGGCCACAGCTCCAATGTGACCCCTAGCCATGGGACCTTCCATACCCCAGGCACGTCTG
TATGCTCCAGGTGCAGCTGTGAGAAAAAAAAAAAAAAAAAAAAAAAGATATGGCTCGTGC
ATCTGAAGAACCGAAGTTTTCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAATAAATAAATAAAAGGAAGAAAGGAAGGAAGAAAAGAAAAGAAAATGCAGGAGAGA
AGAGAAGGGGGCATCCTTAGGCCAAGTCTCTCTGCCATTGACCTGGACAAAACCAAAATG
AACAAAGACCCTTAGGAAGGGTATTTTTGCAGCCCTGACTTCGTTTACCACCTTGCAGCA
GCCACGAGCTGCCCGACGTGAGCCAGCCCCGTGTACTAGGATCTCTTTGGTTTTTCTGTA
ATGAAAGTGGACTAAATAAAAGCTAACGTGATTCTCGTTGATCTGTCTGGTGCCTCTTGG
CCTTCTCTGCCCTCAGCCACATAATCCTGCTGCCTCTGTCTTGACCTCGCTGGGCACACA
TTACGAAACATGTTTGATACCAGTGGTAGAGAAATACCTCGTGGCTGAGGCCTTGAAGAA
AAGCTTCCCCCTGAAGGCCGAGAGGTAGGAGACACTCTCGACCAGCTGAAGAAAGCCAGA
AGCATTCTTCCCAGCACGCGAGCTGAGCAAGCCTGACCCGGCGTGCCCGACATTAAGCCC
CACGGAAAGGAAAGCAAAATAATTTTGTTTTATTTTATTTTTTGGTCTGGAAGGGATGAG
GAACTGTAAGCTGCTGGCATTCACTGCTCAAAAGAAGATTGGCTGGACCATACAGCCGCA
TGCCTAGACTCCTTTGTAATTTCAACTGGGATTTGTCTTGCCCAAAAATATCTGTTGAGG
TCATTCCCAAGGAGGTCTCCATTTGTTCAGCTGTTTCCTGGTACACAGAGGAAACTCGGA
ATTTTCCTTCTAGAGCAGCACAGTCCACGAGAACTTTCTGTGATGAGGGAAAGATCCCAT
ATCTGCACCGCCGAAGATGGTAGCCGCTGGCTTCACATGGCTGTTGAGCATTTGAGATGT
TGGGAGTTCCTCTCGTGGCGTAGCAGGTTAAGAACCCAGCATCGTGTCCATGAGGATTCA
AGTTTGATCTCTGGCCTTGCTCAGGGGGTTAAGGATCTGGCATGGCTA------------
GCGGCCACAGCTCCAATGTGACCCCTAGCCATGGGACCTTCCATACCCCAGGCACGTCTG
TATGCTCCAGGTGCAGCTGTGAGAAAAAAAAAAAAAAAAAAAAAAAGATATGGCTCGTGC
ATCTGAAGAACCGAAGTTTTCTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               770-864, - strand, RNAz p=0.998602

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               770-864, - strand, RNAz p=0.998602

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               202-864, gnl|bosTau2|chr19 (3985112-3984454)
               

               
               202-864, gnl|Hg17|chr17 (53054630-53055325)
               

               
               202-864, gnl|Mm7|chr11 (88461071-88460382)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               202-864, gnl|bosTau2|chr19 (3985112-3984454)
               

               
               202-864, gnl|Hg17|chr17 (53054630-53055325)
               

               
               202-864, gnl|Mm7|chr11 (88461071-88460382)

	202-864, gnl\|bosTau2\|chr19 (3985112-3984454)
	202-864, gnl\|Hg17\|chr17 (53054630-53055325)
	202-864, gnl\|Mm7\|chr11 (88461071-88460382)