Ss1.1-Ova1-OVR010029F07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTAACAGCTGGCCCCCAAGGAAGCAACCTGCTGGTGGGCCCCCTGCCACTGCTCTAAGG GCTGACTTCGGCGGGGGAGTCTCCGTGTCCCCCAGGCAGAAAACCATGAGGGCATAGATC CTAGGAAAAGACGGACTCCTGGAGATTTAACAGTCTGCCCCCCCCGCCCCCGCAGTGAAC CCCGCTGTGAAGCTGCAGTACATGGACAACATCCGCTGGATCCGGGAGGCTGCCAAGCAC CAGCTGGTGGTGGGCTCCCAGGCAAGGATCCTGTACTCAGACCAGAAGGGTCGTGTGGCC ATTGCTGTGGCCTTCAACCAAGCCATCGCCCGTGGGGAGATCAAGGCACCAGTGGTCCTG AGCCGAGACCACCATGACGTCAGTGGTACAGACAGCCCGTTTAGGGAGACCTCCAACATT CATGACGGCTCCGCCTTCTGTGCAGACATGGCTGTGCAGAACTTCGTGGGAGATGCCTTT CGGGGAGCCACCTGGGTTGCTCTTCACAACGGTGGGGGTGTTGGCTGGGGTGAGGTGATC AATGGGGGATTTGGCCTCGTGCTGGACGGGACCGAGGAGGCTGAGCAGAAGGCCAGGATG ATGCTCAGCTGGGACGTCTCCAACGGAGTGGCCCGCCGCTGTTGGTCCAAGCACAGCAAC CCTACTGTGACCATGTGGACCATGGTTGCGTGAGAAGAGCGCACGCGGAAAGCCTGGGAT CCTGGCGGTGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTAACAGCTGGCCCCCAAGGAAGCAACCTGCTGGTGGGCCCCCTGCCACTGCTCTAAGG GCTGACTTCGGCGGGGGAGTCTCCGTGTCCCCCAGGCAGAAAACCATGAGGGCATAGATC CTAGGAAAAGACGGACTCCTGGAGATTTAACAGTCTGCCCCCCCCGCCCCCGCAGTGAAC CCCGCTGTGAAGCTGCAGTACATGGACAACATCCGCTGGATCCGGGAGGCTGCCAAGCAC CAGCTGGTGGTGGGCTCCCAGGCAAGGATCCTGTACTCAGACCAGAAGGGTCGTGTGGCC ATTGCTGTGGCCTTCAACCAAGCCATCGCCCGTGGGGAGATCAAGGCACCAGTGGTCCTG AGCCGAGACCACCATGACGTCAGTGGTACAGACAGCCCGTTTAGGGAGACCTCCAACATT CATGACGGCTCCGCCTTCTGTGCAGACATGGCTGTGCAGAACTTCGTGGGAGATGCCTTT CGGGGAGCCACCTGGGTTGCTCTTCACAACGGTGGGGGTGTTGGCTGGGGTGAGGTGATC AATGGGGGATTTGGCCTCGTGCTGGACGGGACCGAGGAGGCTGAGCAGAAGGCCAGGATG ATGCTCAGCTGGGACGTCTCCAACGGAGTGGCCCGCCGCTGTTGGTCCAAGCACAGCAAC CCTACTGTGACCATGTGGACCATGGTTGCGTGAGAAGAGCGCACGCGGAAAGCCTGGGAT CCTGGCGGTGCA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 250-346, + strand, RNAz p=0.537048 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 250-346, + strand, RNAz p=0.537048 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 238-346, gnl|bosTau2|chr7 (16869493-16869386) | |
| 238-346, gnl|canFam2|chr20 (3690963-3691115) | |
| 238-346, gnl|danRer3|chrUn (106186046-106186183) | |
| 238-346, gnl|fr1|chrUn (228457089-228456934) | |
| 238-346, gnl|hg17|chr3 (127693938-127694095) | |
| 238-346, gnl|Hg17|chr3 (127694065-127693958) | |
| 238-346, gnl|loxAfr1|scaffold_35039 (15905-16039) | |
| 238-346, gnl|mm7|chr6 (90430431-90430269) | |
| 238-346, gnl|Mm7|chr6 (90430298-90430405) | |
| 238-346, gnl|monDom2|scaffold_5 (43521800-43521679) | |
| 238-346, gnl|oryCun1|scaffold_156486 (1015-861) | |
| 238-346, gnl|panTro1|chr2 (129542231-129542388) | |
| 238-346, gnl|rheMac2|chr2 (46268225-46268382) | |
| 238-346, gnl|rn3|chr4 (124858164-124858002) | |
| 238-346, gnl|tetNig1|chr11 (6370336-6370204) | |
| 524-630, gnl|bosTau2|chr7 (16859918-16859812) | |
| 524-630, gnl|canFam2|chr20 (3680145-3680269) | |
| 524-630, gnl|danRer3|chrUn (106183321-106183429) | |
| 524-630, gnl|dasNov1|scaffold_117078 (5643-5767) | |
| 524-630, gnl|echTel1|scaffold_288167 (4627-4748) | |
| 524-630, gnl|fr1|chrUn (228457580-228457467) | |
| 524-630, gnl|galGal2|chr12 (10703746-10703869) | |
| 524-630, gnl|hg17|chr3 (127684905-127685029) | |
| 524-630, gnl|Hg17|chr3 (127685013-127684907) | |
| 524-630, gnl|loxAfr1|scaffold_35039 (3527-3648) | |
| 524-630, gnl|mm7|chr6 (90436588-90436464) | |
| 524-630, gnl|Mm7|chr6 (90436478-90436584) | |
| 524-630, gnl|oryCun1|scaffold_156486 (7323-7201) | |
| 524-630, gnl|rheMac2|chr2 (46259204-46259328) | |
| 524-630, gnl|rn3|chr4 (124864922-124864798) | |
| 524-630, gnl|tetNig1|chr11 (6370832-6370709) | |
| 524-630, gnl|xenTro1|scaffold_368 (943308-943181) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 238-346, gnl|bosTau2|chr7 (16869493-16869386) | |
| 238-346, gnl|canFam2|chr20 (3690963-3691115) | |
| 238-346, gnl|danRer3|chrUn (106186046-106186183) | |
| 238-346, gnl|fr1|chrUn (228457089-228456934) | |
| 238-346, gnl|hg17|chr3 (127693938-127694095) | |
| 238-346, gnl|Hg17|chr3 (127694065-127693958) | |
| 238-346, gnl|loxAfr1|scaffold_35039 (15905-16039) | |
| 238-346, gnl|mm7|chr6 (90430431-90430269) | |
| 238-346, gnl|Mm7|chr6 (90430298-90430405) | |
| 238-346, gnl|monDom2|scaffold_5 (43521800-43521679) | |
| 238-346, gnl|oryCun1|scaffold_156486 (1015-861) | |
| 238-346, gnl|panTro1|chr2 (129542231-129542388) | |
| 238-346, gnl|rheMac2|chr2 (46268225-46268382) | |
| 238-346, gnl|rn3|chr4 (124858164-124858002) | |
| 238-346, gnl|tetNig1|chr11 (6370336-6370204) | |
| 524-630, gnl|bosTau2|chr7 (16859918-16859812) | |
| 524-630, gnl|canFam2|chr20 (3680145-3680269) | |
| 524-630, gnl|danRer3|chrUn (106183321-106183429) | |
| 524-630, gnl|dasNov1|scaffold_117078 (5643-5767) | |
| 524-630, gnl|echTel1|scaffold_288167 (4627-4748) | |
| 524-630, gnl|fr1|chrUn (228457580-228457467) | |
| 524-630, gnl|galGal2|chr12 (10703746-10703869) | |
| 524-630, gnl|hg17|chr3 (127684905-127685029) | |
| 524-630, gnl|Hg17|chr3 (127685013-127684907) | |
| 524-630, gnl|loxAfr1|scaffold_35039 (3527-3648) | |
| 524-630, gnl|mm7|chr6 (90436588-90436464) | |
| 524-630, gnl|Mm7|chr6 (90436478-90436584) | |
| 524-630, gnl|oryCun1|scaffold_156486 (7323-7201) | |
| 524-630, gnl|rheMac2|chr2 (46259204-46259328) | |
| 524-630, gnl|rn3|chr4 (124864922-124864798) | |
| 524-630, gnl|tetNig1|chr11 (6370832-6370709) | |
| 524-630, gnl|xenTro1|scaffold_368 (943308-943181) |