Non-Coding RNA Search

Ss1.1-Ova1-OVR010031B11.5

Sequence:


               
               TTTCATTCTTTT------------TTGGCTGCACCCACAGCATATGAAAGTTCCTGGGGC
AGGGATCAAACCTGTGCCACAGCAGTGACAACATCAGATCCTTAACCTGTTGGGCCACCA
AGGAACTCCTGTACTTTTTCCTCTGTAGGATCCAGGGCCTGGGTCTTCCACTGACTGTGG
AAACACCAAGATTCTTGTAGCGTCATTCTCAGTAACAGAACCCTGTACCTGAAGATTTGT
CCCCTCTGTTCCTTAGTTTTCTGTTTGCACAGTGAGGTGGACTGACTGAATGTATTTTCA
GGTCTTTTACAACCCCAGTGATCTTCAGTCATATAGGCTACTTTCTGGGTATCGTTTTCA
GATCAATCAAACGTGGTGCCATCATGTTGCAGGGTCATGCTTTGAAGGAGGATCATATTC
CCAGTAGAACTCTTGCCTTCCTGAAGTGGATTTTGCTCATGGTCATAGCCTGGTAGTTAA
ATATATGTAGCCTCAAAATTTCCAGCCACTGAAGGAGGTGGGGACGGTGGGGATCAAGCA
TCCAGCAAACACTTAGGCTTGGGAAGCATCCTGGCCTGGCTGGACGAACTCGCACAGAAC
CACTAGTGCCAAGTCAGTTCCCTGGGACTTTTCCAACATTCATCTCTGTATCGCATTTTG
TTCTTATTCCTGAAACAGAGTGGCTACTGAAATCAGGAACTAGAACTGCTGGAAAATACC
TTTGGAAACCACTATGTTGCTTGGTAGAGGAAAGATAACTGCTAGTAGTTCAGATGCTGG
GTCAGTTGTTTTCTTTCTAAAGAGGGGCTTGATTTGCTTTCCTCTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCATTCTTTT------------TTGGCTGCACCCACAGCATATGAAAGTTCCTGGGGC
AGGGATCAAACCTGTGCCACAGCAGTGACAACATCAGATCCTTAACCTGTTGGGCCACCA
AGGAACTCCTGTACTTTTTCCTCTGTAGGATCCAGGGCCTGGGTCTTCCACTGACTGTGG
AAACACCAAGATTCTTGTAGCGTCATTCTCAGTAACAGAACCCTGTACCTGAAGATTTGT
CCCCTCTGTTCCTTAGTTTTCTGTTTGCACAGTGAGGTGGACTGACTGAATGTATTTTCA
GGTCTTTTACAACCCCAGTGATCTTCAGTCATATAGGCTACTTTCTGGGTATCGTTTTCA
GATCAATCAAACGTGGTGCCATCATGTTGCAGGGTCATGCTTTGAAGGAGGATCATATTC
CCAGTAGAACTCTTGCCTTCCTGAAGTGGATTTTGCTCATGGTCATAGCCTGGTAGTTAA
ATATATGTAGCCTCAAAATTTCCAGCCACTGAAGGAGGTGGGGACGGTGGGGATCAAGCA
TCCAGCAAACACTTAGGCTTGGGAAGCATCCTGGCCTGGCTGGACGAACTCGCACAGAAC
CACTAGTGCCAAGTCAGTTCCCTGGGACTTTTCCAACATTCATCTCTGTATCGCATTTTG
TTCTTATTCCTGAAACAGAGTGGCTACTGAAATCAGGAACTAGAACTGCTGGAAAATACC
TTTGGAAACCACTATGTTGCTTGGTAGAGGAAAGATAACTGCTAGTAGTTCAGATGCTGG
GTCAGTTGTTTTCTTTCTAAAGAGGGGCTTGATTTGCTTTCCTCTCTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               610-772, + strand, RNAz p=0.997769

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               610-772, + strand, RNAz p=0.997769

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               126-772, gnl|bosTau2|chr12 (9315617-9316280)
               

               
               126-772, gnl|Hg17|chr13 (40086763-40086115)
               

               
               126-772, gnl|Mm7|chr3 (52426299-52426895)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               126-772, gnl|bosTau2|chr12 (9315617-9316280)
               

               
               126-772, gnl|Hg17|chr13 (40086763-40086115)
               

               
               126-772, gnl|Mm7|chr3 (52426299-52426895)

	126-772, gnl\|bosTau2\|chr12 (9315617-9316280)
	126-772, gnl\|Hg17\|chr13 (40086763-40086115)
	126-772, gnl\|Mm7\|chr3 (52426299-52426895)