Ss1.1-Ova1-OVR010040G04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGCTCGGGGCGGCTCTCGGGCCGCGCCCAACCTGCTCTGGGTTCCGGCGGGCAGCGGAC TGGGGCAGACTCCTGTCTTAGGATGCCTAGGGAGGAGGAGGAGCGAGCCTTCCTGGAGGC CCGCGAGGAGCTGGCGAACGCCCTGAGGAGGGATTCCGGGCAGGCGTTTTCGGTGGAGCA GCTTCGGCCACTACTGGTCACCTCTCTGCCGCCAGCAGCCCGCTACTTGCAGCTGAACGC TGCACGCCTGGTCCGCTGCAACGCTCATGGGGAGCCCCGAAACTACCTCAGCACCCTCTC CACGGCCCTGAACATCCTGGAGAAATATGGCCGCAACCTTCTCAGTCCTCAGCGGCCCCG GTACTGGCGCGGGGTCAAGTTTAATAACCCTGTCTTTCGCAGTACGGTGGATGCTGTGCA GGGGGGCCGGGATGTTCTGCGATAATATGGCTACACAGAGGAGCAGCCAGATGGATTAAG CTTCCCTGAGGGGCAGGAGGAACCAGATGAGCACCAAGTTGCCACAGTCACACTGGAAGT ACTGCTGCTCCGGACAGAGCTCAGTCTTCTGTTACAGAATACTCATCCAAAACCTCAAGC ACTGGAGCAGCTGCTGAAAGACAAGGTTGAAGATGATATATTGCAGCTCTCAGAGTTTGC CCCCTTACTGAGACAGATTGCTCCTGGCCCCCTCACCACACCCTCTGCCCCAGGCTCCAC ACCTGGTCCCTGCTTCCTCTGCGGTTCTGCTCCAGGCACACTGCACTGCTCATCCTGTAA ACAGGCCTTGTGCCCAACTTGCGATTGTCTCTTCCATGGACACCCAGACCGAGCACATCA CCTCCGCCAGACCTTGCCAGGGGTCCCCCAGGCTACCCACCTGACCCCCAGCTTACCTGC CTCGGCTCCACCACGGTCTCAGTCAGCCTTCCTGCTGGCCCTGGGGGACAGCTCTCTCTC TTCCCCTGATCCTGCAAGCGCCTGTCTGCCCTGACACTGTTCTGACTGTGCCATGCTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGCTCGGGGCGGCTCTCGGGCCGCGCCCAACCTGCTCTGGGTTCCGGCGGGCAGCGGAC TGGGGCAGACTCCTGTCTTAGGATGCCTAGGGAGGAGGAGGAGCGAGCCTTCCTGGAGGC CCGCGAGGAGCTGGCGAACGCCCTGAGGAGGGATTCCGGGCAGGCGTTTTCGGTGGAGCA GCTTCGGCCACTACTGGTCACCTCTCTGCCGCCAGCAGCCCGCTACTTGCAGCTGAACGC TGCACGCCTGGTCCGCTGCAACGCTCATGGGGAGCCCCGAAACTACCTCAGCACCCTCTC CACGGCCCTGAACATCCTGGAGAAATATGGCCGCAACCTTCTCAGTCCTCAGCGGCCCCG GTACTGGCGCGGGGTCAAGTTTAATAACCCTGTCTTTCGCAGTACGGTGGATGCTGTGCA GGGGGGCCGGGATGTTCTGCGATAATATGGCTACACAGAGGAGCAGCCAGATGGATTAAG CTTCCCTGAGGGGCAGGAGGAACCAGATGAGCACCAAGTTGCCACAGTCACACTGGAAGT ACTGCTGCTCCGGACAGAGCTCAGTCTTCTGTTACAGAATACTCATCCAAAACCTCAAGC ACTGGAGCAGCTGCTGAAAGACAAGGTTGAAGATGATATATTGCAGCTCTCAGAGTTTGC CCCCTTACTGAGACAGATTGCTCCTGGCCCCCTCACCACACCCTCTGCCCCAGGCTCCAC ACCTGGTCCCTGCTTCCTCTGCGGTTCTGCTCCAGGCACACTGCACTGCTCATCCTGTAA ACAGGCCTTGTGCCCAACTTGCGATTGTCTCTTCCATGGACACCCAGACCGAGCACATCA CCTCCGCCAGACCTTGCCAGGGGTCCCCCAGGCTACCCACCTGACCCCCAGCTTACCTGC CTCGGCTCCACCACGGTCTCAGTCAGCCTTCCTGCTGGCCCTGGGGGACAGCTCTCTCTC TTCCCCTGATCCTGCAAGCGCCTGTCTGCCCTGACACTGTTCTGACTGTGCCATGCTAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 459-577, + strand, RNAz p=0.559444 | |
| 710-809, - strand, RNAz p=0.671193 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 459-577, + strand, RNAz p=0.559444 | |
| 710-809, - strand, RNAz p=0.671193 |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 3-274, gnl|bosTau2|chr10 (12361924-12361653) | |
| 3-274, gnl|Hg17|chr14 (23686667-23686939) | |
| 3-274, gnl|Mm7|chr14 (50459163-50459420) | |
| 420-577, gnl|bosTau2|chr10 (12361293-12361136) | |
| 420-577, gnl|canFam2|chr8 (7148062-7148255) | |
| 420-577, gnl|danRer3|chr24 (3714734-3714909) | |
| 420-577, gnl|dasNov1|scaffold_46711 (10973-10782) | |
| 420-577, gnl|fr1|chrUn (161121130-161121301) | |
| 420-577, gnl|hg17|chr14 (23687283-23687473) | |
| 420-577, gnl|Hg17|chr14 (23687305-23687462) | |
| 420-577, gnl|loxAfr1|scaffold_1306 (121953-122143) | |
| 420-577, gnl|mm7|chr14 (50459783-50459975) | |
| 420-577, gnl|Mm7|chr14 (50459807-50459964) | |
| 420-577, gnl|monDom2|scaffold_12 (25613583-25613395) | |
| 420-577, gnl|oryCun1|scaffold_204481 (57273-57464) | |
| 420-577, gnl|panTro1|chr15 (22587863-22588053) | |
| 420-577, gnl|rheMac2|chr7 (87041881-87042072) | |
| 420-577, gnl|rn3|chr15 (33743910-33744102) | |
| 420-577, gnl|tetNig1|chrUn_random (132814316-132814487) | |
| 420-577, gnl|xenTro1|scaffold_53 (463101-463272) | |
| 710-881, gnl|bosTau2|chr10 (12360447-12360276) | |
| 710-881, gnl|canFam2|chr8 (7148908-7149064) | |
| 710-881, gnl|dasNov1|scaffold_29620 (45499-45652) | |
| 710-881, gnl|echTel1|scaffold_321870 (10582-10729) | |
| 710-881, gnl|hg17|chr14 (23688438-23688588) | |
| 710-881, gnl|Hg17|chr14 (23688451-23688622) | |
| 710-881, gnl|loxAfr1|scaffold_1306 (122777-122930) | |
| 710-881, gnl|mm7|chr14 (50461639-50461776) | |
| 710-881, gnl|Mm7|chr14 (50461639-50461810) | |
| 710-881, gnl|monDom2|scaffold_12 (25612849-25612699) | |
| 710-881, gnl|oryCun1|scaffold_204481 (58092-58229) | |
| 710-881, gnl|panTro1|chr15 (22589018-22589168) | |
| 710-881, gnl|rheMac2|chr7 (87043036-87043186) | |
| 710-881, gnl|rn3|chr15 (33745842-33745979) | |
| 710-881, gnl|xenTro1|scaffold_53 (465620-465770) | |
| 889-1020, gnl|bosTau2|chr10 (12359786-12359655) | |
| 889-1020, gnl|canFam2|chr8 (7149521-7149704) | |
| 889-1020, gnl|dasNov1|scaffold_29620 (46092-46262) | |
| 889-1020, gnl|echTel1|scaffold_143709 (157-327) | |
| 889-1020, gnl|hg17|chr14 (23689039-23689209) | |
| 889-1020, gnl|Hg17|chr14 (23689107-23689238) | |
| 889-1020, gnl|loxAfr1|scaffold_1306 (123391-123554) | |
| 889-1020, gnl|mm7|chr14 (50462201-50462367) | |
| 889-1020, gnl|Mm7|chr14 (50462268-50462396) | |
| 889-1020, gnl|monDom2|scaffold_12 (25612568-25612389) | |
| 889-1020, gnl|oryCun1|scaffold_76019 (140-306) | |
| 889-1020, gnl|panTro1|chr15 (22589619-22589789) | |
| 889-1020, gnl|rheMac2|chr7 (87043637-87043807) | |
| 889-1020, gnl|rn3|chr15 (33746404-33746571) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-274, gnl|bosTau2|chr10 (12361924-12361653) | |
| 3-274, gnl|Hg17|chr14 (23686667-23686939) | |
| 3-274, gnl|Mm7|chr14 (50459163-50459420) | |
| 420-577, gnl|bosTau2|chr10 (12361293-12361136) | |
| 420-577, gnl|canFam2|chr8 (7148062-7148255) | |
| 420-577, gnl|danRer3|chr24 (3714734-3714909) | |
| 420-577, gnl|dasNov1|scaffold_46711 (10973-10782) | |
| 420-577, gnl|fr1|chrUn (161121130-161121301) | |
| 420-577, gnl|hg17|chr14 (23687283-23687473) | |
| 420-577, gnl|Hg17|chr14 (23687305-23687462) | |
| 420-577, gnl|loxAfr1|scaffold_1306 (121953-122143) | |
| 420-577, gnl|mm7|chr14 (50459783-50459975) | |
| 420-577, gnl|Mm7|chr14 (50459807-50459964) | |
| 420-577, gnl|monDom2|scaffold_12 (25613583-25613395) | |
| 420-577, gnl|oryCun1|scaffold_204481 (57273-57464) | |
| 420-577, gnl|panTro1|chr15 (22587863-22588053) | |
| 420-577, gnl|rheMac2|chr7 (87041881-87042072) | |
| 420-577, gnl|rn3|chr15 (33743910-33744102) | |
| 420-577, gnl|tetNig1|chrUn_random (132814316-132814487) | |
| 420-577, gnl|xenTro1|scaffold_53 (463101-463272) | |
| 710-881, gnl|bosTau2|chr10 (12360447-12360276) | |
| 710-881, gnl|canFam2|chr8 (7148908-7149064) | |
| 710-881, gnl|dasNov1|scaffold_29620 (45499-45652) | |
| 710-881, gnl|echTel1|scaffold_321870 (10582-10729) | |
| 710-881, gnl|hg17|chr14 (23688438-23688588) | |
| 710-881, gnl|Hg17|chr14 (23688451-23688622) | |
| 710-881, gnl|loxAfr1|scaffold_1306 (122777-122930) | |
| 710-881, gnl|mm7|chr14 (50461639-50461776) | |
| 710-881, gnl|Mm7|chr14 (50461639-50461810) | |
| 710-881, gnl|monDom2|scaffold_12 (25612849-25612699) | |
| 710-881, gnl|oryCun1|scaffold_204481 (58092-58229) | |
| 710-881, gnl|panTro1|chr15 (22589018-22589168) | |
| 710-881, gnl|rheMac2|chr7 (87043036-87043186) | |
| 710-881, gnl|rn3|chr15 (33745842-33745979) | |
| 710-881, gnl|xenTro1|scaffold_53 (465620-465770) | |
| 889-1020, gnl|bosTau2|chr10 (12359786-12359655) | |
| 889-1020, gnl|canFam2|chr8 (7149521-7149704) | |
| 889-1020, gnl|dasNov1|scaffold_29620 (46092-46262) | |
| 889-1020, gnl|echTel1|scaffold_143709 (157-327) | |
| 889-1020, gnl|hg17|chr14 (23689039-23689209) | |
| 889-1020, gnl|Hg17|chr14 (23689107-23689238) | |
| 889-1020, gnl|loxAfr1|scaffold_1306 (123391-123554) | |
| 889-1020, gnl|mm7|chr14 (50462201-50462367) | |
| 889-1020, gnl|Mm7|chr14 (50462268-50462396) | |
| 889-1020, gnl|monDom2|scaffold_12 (25612568-25612389) | |
| 889-1020, gnl|oryCun1|scaffold_76019 (140-306) | |
| 889-1020, gnl|panTro1|chr15 (22589619-22589789) | |
| 889-1020, gnl|rheMac2|chr7 (87043637-87043807) | |
| 889-1020, gnl|rn3|chr15 (33746404-33746571) |