Non-Coding RNA Search

Ss1.1-Ova1-OVR010044C10.5

Sequence:


               
               TTACCCTCAGGCTTCTATTAAGTGAGGGTATAAGCCCATTTTATCGCAGCATTAAAAGGG
GGGCCCAACAAGAACCCTGGCGGGCCTGCCGACTTGGCAAAGGCAGGTTGCGGGGGCGGA
GACAGGGAAGGAAATGAGAGGAAGGAGAAGAAGTGTGTGAAGGAGATAACCTTTCAAAAA
AAGTCCGCCTCCCTGGGGAGGCGTGTGCAGGCCACCCCCGGGGACGGCCCCCCACCCCCA
ACACCGGTCAGCACAGCAGTCACCTCCTGAACTTTATCATCTTTCAGCAAGACAGAGTGT
GGACCTAGAAAAGCTTTCACCTCCAGACCAGTCCCAAGCATATTTCACTGTGGCTGGGAT
CCACAGCTTGCAGGCTGTGATATGTATCTGTGAGCTTCTGGGGTTTAAAAACATCTGAAA
GTTTGAAAGGGAAAGGGTCAGTTTTACTGTGTTAAAAAAAAAAAAAAATCCTGCTCAAAA
TTGTCATGGTTAAATGAAATGAATTTTGCTTAATAATTTCCAGGGATTTTTTTTTTTTTT
TTTGAACATCTGTATAAAGAATTTTACTTAATTTTTCAATTACCTGAATTTGAGGCTGGA
CAGTAGGCTTTGAGAGGAGCAGGTTTTGCCCCAGCTCTAGCAAATTGGAGGTGCAATTTG
GTGGCAGAGTTAGAAAGGTTGTGCTTATCAAGCAGCTGCAAACGGGCGCCACCAAGATCT
CCCGATAGGAGTTTCAGCATAGCTGACTTTAGATACCCAGAAATAAATTCTCAGCATCTC
TAGTTTCTCAACTTCGCCTGCACACAGGTAACAGGTACTCCCTTTCATAGGCGTGATTGC
ACTCCATTAGTCCCTATCACTCTGTGGATAGGCCTCTCTGATATCTTTTCCTCAGATACA
TCCTTGATTGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACCCTCAGGCTTCTATTAAGTGAGGGTATAAGCCCATTTTATCGCAGCATTAAAAGGG
GGGCCCAACAAGAACCCTGGCGGGCCTGCCGACTTGGCAAAGGCAGGTTGCGGGGGCGGA
GACAGGGAAGGAAATGAGAGGAAGGAGAAGAAGTGTGTGAAGGAGATAACCTTTCAAAAA
AAGTCCGCCTCCCTGGGGAGGCGTGTGCAGGCCACCCCCGGGGACGGCCCCCCACCCCCA
ACACCGGTCAGCACAGCAGTCACCTCCTGAACTTTATCATCTTTCAGCAAGACAGAGTGT
GGACCTAGAAAAGCTTTCACCTCCAGACCAGTCCCAAGCATATTTCACTGTGGCTGGGAT
CCACAGCTTGCAGGCTGTGATATGTATCTGTGAGCTTCTGGGGTTTAAAAACATCTGAAA
GTTTGAAAGGGAAAGGGTCAGTTTTACTGTGTTAAAAAAAAAAAAAAATCCTGCTCAAAA
TTGTCATGGTTAAATGAAATGAATTTTGCTTAATAATTTCCAGGGATTTTTTTTTTTTTT
TTTGAACATCTGTATAAAGAATTTTACTTAATTTTTCAATTACCTGAATTTGAGGCTGGA
CAGTAGGCTTTGAGAGGAGCAGGTTTTGCCCCAGCTCTAGCAAATTGGAGGTGCAATTTG
GTGGCAGAGTTAGAAAGGTTGTGCTTATCAAGCAGCTGCAAACGGGCGCCACCAAGATCT
CCCGATAGGAGTTTCAGCATAGCTGACTTTAGATACCCAGAAATAAATTCTCAGCATCTC
TAGTTTCTCAACTTCGCCTGCACACAGGTAACAGGTACTCCCTTTCATAGGCGTGATTGC
ACTCCATTAGTCCCTATCACTCTGTGGATAGGCCTCTCTGATATCTTTTCCTCAGATACA
TCCTTGATTGAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               116-216, - strand, RNAz p=0.989684

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               116-216, - strand, RNAz p=0.989684

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-912, gnl|bosTau2|chr11 (47036016-47035111)
               

               
               1-912, gnl|Hg17|chr2 (66595363-66596362)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-912, gnl|bosTau2|chr11 (47036016-47035111)
               

               
               1-912, gnl|Hg17|chr2 (66595363-66596362)

	1-912, gnl\|bosTau2\|chr11 (47036016-47035111)
	1-912, gnl\|Hg17\|chr2 (66595363-66596362)