Non-Coding RNA Search

Ss1.1-Ova1-OVR010048B01.5

Sequence:


               
               GTCGTGTGTAAATTTGTCAGTTTTTGTTTTCTTTTTTCTGTGGAACTGCAGCCTGAGGCT
GCAAGTCGAGGAGTCCAGGAGAGTATTAAGGACTGAGACTGAGGTCGCTCTGCCCTTCTG
TGGGCAGAGCGTCCGGAGCGCCCCCGAGTCCACTCTCACTCGCGGGGCCACCGCTGTCCC
CAGGTCCTCTATCCTCAGCATGGGCGGCCGGTAGGAAGGGGATTTTGTTGGTTCCCTCGC
AGCTGAGGAGGCAGCAGCTGTTCCTGCGGTGACGGCTATGGCGGTGGAGACGCGGCCGGA
ACTGGTGGGGAAGCGGTTTCTGTGCGTGGCGGTCGGCGAAGAGGTGCAGCCAGAGCGCAG
GCAGAGCGGACGCTGCTGGCGGGGCTGGCGAGCTGGGGTCATCCGAGCTGTGTCACATAG
GGACAGCCGCAATCCCGACCTGGCGGTAAGAGAGCGAACGTCCCTCTGCCTCACCCCCGC
CCCCACCCCAGCCTCGCAGCCGCACCTAGTGGGGTTACCTCTGGCACCTGGCTCTTCTCG
CCCAACTGGCGTCACGCCCCTCTTCTGTGCTCTGGGCGGGTTTGCCTACAACCCCAGCCA
GAGTTGCCGCCTCCCCGCGAGTAGCTTCCCCCGCAGGGGGTGACCAAGCGGGACTCCCCA
GTGGCCGCTCGGCCCCCTTGCTGCTCTCTGGGAGGGGTTCGGCCGCGGCTTCTGCGGCGT
CCCGGCTGCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCGTGTGTAAATTTGTCAGTTTTTGTTTTCTTTTTTCTGTGGAACTGCAGCCTGAGGCT
GCAAGTCGAGGAGTCCAGGAGAGTATTAAGGACTGAGACTGAGGTCGCTCTGCCCTTCTG
TGGGCAGAGCGTCCGGAGCGCCCCCGAGTCCACTCTCACTCGCGGGGCCACCGCTGTCCC
CAGGTCCTCTATCCTCAGCATGGGCGGCCGGTAGGAAGGGGATTTTGTTGGTTCCCTCGC
AGCTGAGGAGGCAGCAGCTGTTCCTGCGGTGACGGCTATGGCGGTGGAGACGCGGCCGGA
ACTGGTGGGGAAGCGGTTTCTGTGCGTGGCGGTCGGCGAAGAGGTGCAGCCAGAGCGCAG
GCAGAGCGGACGCTGCTGGCGGGGCTGGCGAGCTGGGGTCATCCGAGCTGTGTCACATAG
GGACAGCCGCAATCCCGACCTGGCGGTAAGAGAGCGAACGTCCCTCTGCCTCACCCCCGC
CCCCACCCCAGCCTCGCAGCCGCACCTAGTGGGGTTACCTCTGGCACCTGGCTCTTCTCG
CCCAACTGGCGTCACGCCCCTCTTCTGTGCTCTGGGCGGGTTTGCCTACAACCCCAGCCA
GAGTTGCCGCCTCCCCGCGAGTAGCTTCCCCCGCAGGGGGTGACCAAGCGGGACTCCCCA
GTGGCCGCTCGGCCCCCTTGCTGCTCTCTGGGAGGGGTTCGGCCGCGGCTTCTGCGGCGT
CCCGGCTGCTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q96I28_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96I28_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-198, + strand, RNAz p=0.999358

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-198, + strand, RNAz p=0.999358

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               41-198, BP141726 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP141726.1|), blast E-value=0, identity=100%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               41-198, BP141726 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP141726.1|), blast E-value=0, identity=100%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-729, gnl|bosTau2|chr24 (30795409-30794668)
               

               
               3-729, gnl|Hg17|chr10 (64895689-64894966)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-729, gnl|bosTau2|chr24 (30795409-30794668)
               

               
               3-729, gnl|Hg17|chr10 (64895689-64894966)

	3-729, gnl\|bosTau2\|chr24 (30795409-30794668)
	3-729, gnl\|Hg17\|chr10 (64895689-64894966)