Non-Coding RNA Search

Ss1.1-Ova1-OVRM10003G08.5

Sequence:


               
               ATTTTTTAAAAGAAACAAGATGCTGTGCCTGCTATGAGACCATACCTTTTTTTTGGTGAC
TTTTGGGCAAAGGACGGAGAACCAGAATGCCAAGTTGGAGCTGAGCCGCTTCTGTTGGCT
ATGGCCAATCCAGTGCCCTTTGGAAGTTGGGAGAGGCTCCAGGGCTGGGGGAGGAGGGAC
TGGGCCTCCCAGGGTTGGTGCTCCCCAGGAGCCACAGGTCAGGAAGAGGTTCAGTGCCGA
GGGGTTCTGCTGCTTGTGGCTCCTGTCAGGGTGTTAGTGGTGGTCCGAGTGCTCAGTCTT
CTTGGCTATGGCACTGTCGAAACAGCTTGGGGAAGAAAGATCCTCCTGTTCAGCTTCCCC
ATCCACCACCTAAGTTCTCCTTGCTAGAGATTTCCTCAGCTAATTGTGGACAGTGAGGTT
TCCTGCCTCAAAAACTTGGGTTGAGGAGAGGACAGATCCTACTCTGGTCAGATTGCTGAT
CTGGGTAGCACACTGAATGTTTAAATTCCAAAGGATCCCCCTTAGGAAAGGACCTGGCGT
GTGAAGGAGCCTCTGTGTTAATCTGGTGGTGGCCTTACCTGGATGAGGCCGGGTCCTGGT
GCGCCTGCCACCATGGTGCCGGTGATGTAGAGAGCCTGCTACTGCCCATTAGTGCTTCCC
CTCTGTCTGGCCCACCATGCCAGTCAAGGTCCCTGCTATGGGGCCAACAGGAGAAAAGGG
GGTCAGTGAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTTTAAAAGAAACAAGATGCTGTGCCTGCTATGAGACCATACCTTTTTTTTGGTGAC
TTTTGGGCAAAGGACGGAGAACCAGAATGCCAAGTTGGAGCTGAGCCGCTTCTGTTGGCT
ATGGCCAATCCAGTGCCCTTTGGAAGTTGGGAGAGGCTCCAGGGCTGGGGGAGGAGGGAC
TGGGCCTCCCAGGGTTGGTGCTCCCCAGGAGCCACAGGTCAGGAAGAGGTTCAGTGCCGA
GGGGTTCTGCTGCTTGTGGCTCCTGTCAGGGTGTTAGTGGTGGTCCGAGTGCTCAGTCTT
CTTGGCTATGGCACTGTCGAAACAGCTTGGGGAAGAAAGATCCTCCTGTTCAGCTTCCCC
ATCCACCACCTAAGTTCTCCTTGCTAGAGATTTCCTCAGCTAATTGTGGACAGTGAGGTT
TCCTGCCTCAAAAACTTGGGTTGAGGAGAGGACAGATCCTACTCTGGTCAGATTGCTGAT
CTGGGTAGCACACTGAATGTTTAAATTCCAAAGGATCCCCCTTAGGAAAGGACCTGGCGT
GTGAAGGAGCCTCTGTGTTAATCTGGTGGTGGCCTTACCTGGATGAGGCCGGGTCCTGGT
GCGCCTGCCACCATGGTGCCGGTGATGTAGAGAGCCTGCTACTGCCCATTAGTGCTTCCC
CTCTGTCTGGCCCACCATGCCAGTCAAGGTCCCTGCTATGGGGCCAACAGGAGAAAAGGG
GGTCAGTGAGCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               200-525, - strand, RNAz p=0.820582

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-525, - strand, RNAz p=0.820582

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-599, gnl|bosTau2|chr17 (43017417-43016789)
               

               
               1-599, gnl|canFam2|chr26 (26982487-26982905)
               

               
               1-599, gnl|echTel1|scaffold_245683 (5743-6165)
               

               
               1-599, gnl|hg17|chr22 (29646463-29646902)
               

               
               1-599, gnl|Hg17|chr22 (29647165-29646497)
               

               
               1-599, gnl|loxAfr1|scaffold_91715 (2869-3361)
               

               
               1-599, gnl|mm7|chr11 (3641873-3641483)
               

               
               1-599, gnl|Mm7|chr11 (3641276-3641854)
               

               
               1-599, gnl|oryCun1|scaffold_198262 (687-1155)
               

               
               1-599, gnl|panTro1|chr23 (29736529-29736968)
               

               
               1-599, gnl|rheMac2|chr10 (74802970-74803410)
               

               
               1-599, gnl|rn3|chr14 (84355303-84354938)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-599, gnl|bosTau2|chr17 (43017417-43016789)
               

               
               1-599, gnl|canFam2|chr26 (26982487-26982905)
               

               
               1-599, gnl|echTel1|scaffold_245683 (5743-6165)
               

               
               1-599, gnl|hg17|chr22 (29646463-29646902)
               

               
               1-599, gnl|Hg17|chr22 (29647165-29646497)
               

               
               1-599, gnl|loxAfr1|scaffold_91715 (2869-3361)
               

               
               1-599, gnl|mm7|chr11 (3641873-3641483)
               

               
               1-599, gnl|Mm7|chr11 (3641276-3641854)
               

               
               1-599, gnl|oryCun1|scaffold_198262 (687-1155)
               

               
               1-599, gnl|panTro1|chr23 (29736529-29736968)
               

               
               1-599, gnl|rheMac2|chr10 (74802970-74803410)
               

               
               1-599, gnl|rn3|chr14 (84355303-84354938)

	1-599, gnl\|bosTau2\|chr17 (43017417-43016789)
	1-599, gnl\|canFam2\|chr26 (26982487-26982905)
	1-599, gnl\|echTel1\|scaffold_245683 (5743-6165)
	1-599, gnl\|hg17\|chr22 (29646463-29646902)
	1-599, gnl\|Hg17\|chr22 (29647165-29646497)
	1-599, gnl\|loxAfr1\|scaffold_91715 (2869-3361)
	1-599, gnl\|mm7\|chr11 (3641873-3641483)
	1-599, gnl\|Mm7\|chr11 (3641276-3641854)
	1-599, gnl\|oryCun1\|scaffold_198262 (687-1155)
	1-599, gnl\|panTro1\|chr23 (29736529-29736968)
	1-599, gnl\|rheMac2\|chr10 (74802970-74803410)
	1-599, gnl\|rn3\|chr14 (84355303-84354938)