Non-Coding RNA Search

Ss1.1-Ova1-OVRM10006F10.5

Sequence:


               
               ATTGTGTCAGGGTTTTTTTGTTTTTAAACCTTCAAAAAAGGTTTGTTTGTTTTTCAAAAC
CTTCAAAAAATGTGAAAACTCGTCTGAGCTCAAGGGCTGTACAAACCCAGGCCCCAGGCA
CTATTTGGAAGGTTGCCAACCCCCATGACCCTTGGAAGGCCAGCTATCTCTGCAGCTTGA
GTCTGCCTCCGGCCTGCCTTCGGTGCAGTGGGAACCTGAGCAGGAGGGCTGGGTCGGGTG
TTGTTTTTCTTCTAATGTTCCTTGAGAGATTGGTGAGTAAATTATTTAGGCTACAAATGA
GTCAGCTTTAGCAGGGTCGGGCAATAAGAGCCCGCTCTCCTCGAGGCCAGGATGTGGACT
TCTCCACTCCCTCCCCATCCTGAGAGACCGTGTCCAGGAGACAGGCAGAGGCCTCCGGCC
TCCTGCCCATCGTGCTCGGCTGTGAGCTGGCGGTGAGCCTGAAAGCGGAGAGATGATGAC
GGGCAAACGCCCCTCGAGCCACCAACCCCGGGCAGCCTTGCTTCCGCCAAAGTCCAGCCT
CCTTGTCCGCCCTGACTCCCCCCTCCTCCCTGTTTCAGAGGAGACTCTTTCCTTTGGCAC
ATGCTGGAATTTACTCATTCATTTTTTTAACCCCTCAAAGCCTCTGTTTCCTCCTGACCT
AGTCATATATTTATTTGGCGGGCTTTGCAGGGTATTCTTTTATATGGTCAGGAGAGCCCC
TCATATGAGGATCTGCTGGAGAAGGGGAAGCATCTCACCTCCCAACAGAAGCTCCCTTGG
GTCTTGCCTCCAATGAAGTCAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGTGTCAGGGTTTTTTTGTTTTTAAACCTTCAAAAAAGGTTTGTTTGTTTTTCAAAAC
CTTCAAAAAATGTGAAAACTCGTCTGAGCTCAAGGGCTGTACAAACCCAGGCCCCAGGCA
CTATTTGGAAGGTTGCCAACCCCCATGACCCTTGGAAGGCCAGCTATCTCTGCAGCTTGA
GTCTGCCTCCGGCCTGCCTTCGGTGCAGTGGGAACCTGAGCAGGAGGGCTGGGTCGGGTG
TTGTTTTTCTTCTAATGTTCCTTGAGAGATTGGTGAGTAAATTATTTAGGCTACAAATGA
GTCAGCTTTAGCAGGGTCGGGCAATAAGAGCCCGCTCTCCTCGAGGCCAGGATGTGGACT
TCTCCACTCCCTCCCCATCCTGAGAGACCGTGTCCAGGAGACAGGCAGAGGCCTCCGGCC
TCCTGCCCATCGTGCTCGGCTGTGAGCTGGCGGTGAGCCTGAAAGCGGAGAGATGATGAC
GGGCAAACGCCCCTCGAGCCACCAACCCCGGGCAGCCTTGCTTCCGCCAAAGTCCAGCCT
CCTTGTCCGCCCTGACTCCCCCCTCCTCCCTGTTTCAGAGGAGACTCTTTCCTTTGGCAC
ATGCTGGAATTTACTCATTCATTTTTTTAACCCCTCAAAGCCTCTGTTTCCTCCTGACCT
AGTCATATATTTATTTGGCGGGCTTTGCAGGGTATTCTTTTATATGGTCAGGAGAGCCCC
TCATATGAGGATCTGCTGGAGAAGGGGAAGCATCTCACCTCCCAACAGAAGCTCCCTTGG
GTCTTGCCTCCAATGAAGTCAATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               317-432, - strand, RNAz p=0.603052

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               317-432, - strand, RNAz p=0.603052

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               56-804, gnl|bosTau2|chr3 (27432592-27433318)
               

               
               56-804, gnl|Hg17|chr1 (112984326-112985111)
               

               
               56-804, gnl|Mm7|chr3 (104562139-104561425)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-804, gnl|bosTau2|chr3 (27432592-27433318)
               

               
               56-804, gnl|Hg17|chr1 (112984326-112985111)
               

               
               56-804, gnl|Mm7|chr3 (104562139-104561425)

	56-804, gnl\|bosTau2\|chr3 (27432592-27433318)
	56-804, gnl\|Hg17\|chr1 (112984326-112985111)
	56-804, gnl\|Mm7\|chr3 (104562139-104561425)