Non-Coding RNA Search

Ss1.1-Ova1-OVRM10008H12.5

Sequence:


               
               CCTGACCATCTATGAGCTGAGCTCACCCCTCTGCTGGGACTCTAGGCTGATCGGCTATGG
CTCTGCGGCTCAGCAACTCCCCTACCTCACCAGCCTGCTGGGCCTGCGGCTTCTGCAGCA
CTGCCTGGCCGACAGCTGGGTGGCTGAGGTCGGCCTGACCTTCAACATCCTGGGGTTGGT
GGTCTTTGCGTTTGCTACCATCACCCCCCTCATGTTCACAGGGTACGGGCTCCTCTTTCT
GTCGCTGGTCATCACTCCTGTCATCCGGGCCAAGCTGTCCAAGCTGGTGAGCGTGTCTGA
GCAGGGTGCTCTCTTTTCCGCCGTGGCCTGTGTGAATAGCTTGGCCATGCTGCTGGCCTC
CGGCATCTTCAACGCGCTCTACCCGGCCACCCTGAACTTCATGAAGGGGTTCCCCTTCCT
CCTGGGCGCTGGCCTCCTCCTCATCCCCGCCCTCCTGATTGGGATCCTGGAAAGGGCTAA
TCATTGCCGTGAATTCCAACAGTTTTCCCAGAGCCCCTGATCGGCCTGGACCAGAGGACA
GAGGGCAAGAGGCAGCAACGTGAGCACTAACCAACTGGAAGGATCCCAGCCCCCAGCAGC
AGCAGCAGCAGCTCCCCCCGCAGGGCAGGGTTCGCCTTGGACCAGGTGGTCAAGCTAGAC
CACGGCCCCCACCTCATCCACAGCCGTGCCACTAGGATCGAAATTGTAACCCAGACAGTC
CCGCTCCAGGGCAGGCATGGGGGGAGCCATTTGGAACAGGGATCTGTTTACCCTTTAGGC
CGTCAACCACAGAGACCTCTCCAAGAGGGGAGGAGAGGTCGGGCTGGAGGGCCTGGATGG
ACTGGCACCTGCCCTTCCAACCCCAACTGCACAGTTCATGGCGAGCAGCCACCAGTCACT
GCTTGGTGATGAAAATGGTACCCGGTCAGTGTCGGCAGTGCAGGGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGACCATCTATGAGCTGAGCTCACCCCTCTGCTGGGACTCTAGGCTGATCGGCTATGG
CTCTGCGGCTCAGCAACTCCCCTACCTCACCAGCCTGCTGGGCCTGCGGCTTCTGCAGCA
CTGCCTGGCCGACAGCTGGGTGGCTGAGGTCGGCCTGACCTTCAACATCCTGGGGTTGGT
GGTCTTTGCGTTTGCTACCATCACCCCCCTCATGTTCACAGGGTACGGGCTCCTCTTTCT
GTCGCTGGTCATCACTCCTGTCATCCGGGCCAAGCTGTCCAAGCTGGTGAGCGTGTCTGA
GCAGGGTGCTCTCTTTTCCGCCGTGGCCTGTGTGAATAGCTTGGCCATGCTGCTGGCCTC
CGGCATCTTCAACGCGCTCTACCCGGCCACCCTGAACTTCATGAAGGGGTTCCCCTTCCT
CCTGGGCGCTGGCCTCCTCCTCATCCCCGCCCTCCTGATTGGGATCCTGGAAAGGGCTAA
TCATTGCCGTGAATTCCAACAGTTTTCCCAGAGCCCCTGATCGGCCTGGACCAGAGGACA
GAGGGCAAGAGGCAGCAACGTGAGCACTAACCAACTGGAAGGATCCCAGCCCCCAGCAGC
AGCAGCAGCAGCTCCCCCCGCAGGGCAGGGTTCGCCTTGGACCAGGTGGTCAAGCTAGAC
CACGGCCCCCACCTCATCCACAGCCGTGCCACTAGGATCGAAATTGTAACCCAGACAGTC
CCGCTCCAGGGCAGGCATGGGGGGAGCCATTTGGAACAGGGATCTGTTTACCCTTTAGGC
CGTCAACCACAGAGACCTCTCCAAGAGGGGAGGAGAGGTCGGGCTGGAGGGCCTGGATGG
ACTGGCACCTGCCCTTCCAACCCCAACTGCACAGTTCATGGCGAGCAGCCACCAGTCACT
GCTTGGTGATGAAAATGGTACCCGGTCAGTGTCGGCAGTGCAGGGAGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|19353603|gb|AAH24522.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|19353603|gb|AAH24522.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-159, + strand, RNAz p=0.865809

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, + strand, RNAz p=0.865809

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-222, gnl|bosTau2|chr19 (13431674-13431453)
               

               
               1-222, gnl|canFam2|chr9 (45973891-45974360)
               

               
               1-222, gnl|danRer3|chr15 (33463792-33464251)
               

               
               1-222, gnl|dasNov1|scaffold_50023 (4570-5039)
               

               
               1-222, gnl|fr1|chrUn (263747184-263747715)
               

               
               1-222, gnl|galGal2|chr19 (5314361-5314823)
               

               
               1-222, gnl|hg17|chr17 (23755749-23756218)
               

               
               1-222, gnl|Hg17|chr17 (23755981-23755760)
               

               
               1-222, gnl|mm7|chr11 (78548783-78548323)
               

               
               1-222, gnl|Mm7|chr11 (78548558-78548779)
               

               
               1-222, gnl|monDom2|scaffold_44 (14212608-14213087)
               

               
               1-222, gnl|oryCun1|scaffold_205879 (99958-100427)
               

               
               1-222, gnl|panTro1|chr19 (27094099-27094568)
               

               
               1-222, gnl|rheMac2|chr16 (23587413-23587882)
               

               
               1-222, gnl|rn3|chr10 (64591143-64590683)
               

               
               1-222, gnl|tetNig1|chr10 (10129903-10129425)
               

               
               1-222, gnl|xenTro1|scaffold_50 (1699579-1699119)
               


               
               462-922, gnl|bosTau2|chr19 (13427628-13427153)
               

               
               462-922, gnl|Hg17|chr17 (23750857-23750346)
               

               
               462-922, gnl|Mm7|chr11 (78552945-78553384)

Aligned organism(s): 20 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-222, gnl|bosTau2|chr19 (13431674-13431453)
               

               
               1-222, gnl|canFam2|chr9 (45973891-45974360)
               

               
               1-222, gnl|danRer3|chr15 (33463792-33464251)
               

               
               1-222, gnl|dasNov1|scaffold_50023 (4570-5039)
               

               
               1-222, gnl|fr1|chrUn (263747184-263747715)
               

               
               1-222, gnl|galGal2|chr19 (5314361-5314823)
               

               
               1-222, gnl|hg17|chr17 (23755749-23756218)
               

               
               1-222, gnl|Hg17|chr17 (23755981-23755760)
               

               
               1-222, gnl|mm7|chr11 (78548783-78548323)
               

               
               1-222, gnl|Mm7|chr11 (78548558-78548779)
               

               
               1-222, gnl|monDom2|scaffold_44 (14212608-14213087)
               

               
               1-222, gnl|oryCun1|scaffold_205879 (99958-100427)
               

               
               1-222, gnl|panTro1|chr19 (27094099-27094568)
               

               
               1-222, gnl|rheMac2|chr16 (23587413-23587882)
               

               
               1-222, gnl|rn3|chr10 (64591143-64590683)
               

               
               1-222, gnl|tetNig1|chr10 (10129903-10129425)
               

               
               1-222, gnl|xenTro1|scaffold_50 (1699579-1699119)
               


               
               462-922, gnl|bosTau2|chr19 (13427628-13427153)
               

               
               462-922, gnl|Hg17|chr17 (23750857-23750346)
               

               
               462-922, gnl|Mm7|chr11 (78552945-78553384)

	1-222, gnl\|bosTau2\|chr19 (13431674-13431453)
	1-222, gnl\|canFam2\|chr9 (45973891-45974360)
	1-222, gnl\|danRer3\|chr15 (33463792-33464251)
	1-222, gnl\|dasNov1\|scaffold_50023 (4570-5039)
	1-222, gnl\|fr1\|chrUn (263747184-263747715)
	1-222, gnl\|galGal2\|chr19 (5314361-5314823)
	1-222, gnl\|hg17\|chr17 (23755749-23756218)
	1-222, gnl\|Hg17\|chr17 (23755981-23755760)
	1-222, gnl\|mm7\|chr11 (78548783-78548323)
	1-222, gnl\|Mm7\|chr11 (78548558-78548779)
	1-222, gnl\|monDom2\|scaffold_44 (14212608-14213087)
	1-222, gnl\|oryCun1\|scaffold_205879 (99958-100427)
	1-222, gnl\|panTro1\|chr19 (27094099-27094568)
	1-222, gnl\|rheMac2\|chr16 (23587413-23587882)
	1-222, gnl\|rn3\|chr10 (64591143-64590683)
	1-222, gnl\|tetNig1\|chr10 (10129903-10129425)
	1-222, gnl\|xenTro1\|scaffold_50 (1699579-1699119)

	462-922, gnl\|bosTau2\|chr19 (13427628-13427153)
	462-922, gnl\|Hg17\|chr17 (23750857-23750346)
	462-922, gnl\|Mm7\|chr11 (78552945-78553384)